DADA2, reimplemented in Rust
active 2026-04-14 → 2026-08-31 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 140 days from 2026-04-14 to 2026-08-31. Pushes: 145 total, peak 9 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 7 total, peak 3 in a day. Comments: 12 total, peak 2 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Pull request#57cjfields2026-06-21 02:51
- Issue#3cjfields2026-06-17 01:59Benchmarking checklists
- Pull request#42cjfields2026-06-15 21:49
- Issue#35cjfields2026-06-14 03:39Correctness guard rails
- Issue comment#23cjfields2026-06-07 02:11perf/memory: compact in-memory representation for uniques + quals (u8 quals, encoded seq)
- Issue comment#23cjfields2026-06-07 01:45perf/memory: compact in-memory representation for uniques + quals (u8 quals, encoded seq)
- Issue#22cjfields2026-06-06 21:49Evaluate whether --cache-samples (dada-pseudo) is worth keeping
- Issue#16jianshu932026-05-22 17:22long amplicons
- Issue comment#15cjfields2026-05-22 04:29Evaluate optimal --kmer-size default for PacBio HiFi data
- Issue#15cjfields2026-05-22 04:27Evaluate optimal --kmer-size default for PacBio HiFi data
- Issue#12cjfields2026-05-22 04:24Read tracking
- Issue comment#12cjfields2026-05-22 04:24Read tracking
- Issue comment#14cjfields2026-05-18 00:56learn-errors: investigate residual diffs vs R DADA2 at scale (363 samples)
- Issue comment#14cjfields2026-05-17 04:39learn-errors: investigate residual diffs vs R DADA2 at scale (363 samples)
- Issue#7cjfields2026-05-02 21:12`--show-map` needs to be on by default with the `dada` command
- Issue comment#11cjfields2026-05-02 20:07Add semantic versioning
- Issue comment#9cjfields2026-04-30 03:45`make-sequence-table` isn't recognizing a merged sequence table yet
- Issue comment#3cjfields2026-04-26 21:55Benchmarking checklists
- Issue comment#3cjfields2026-04-26 21:52Benchmarking checklists
- Issue comment#4cjfields2026-04-25 15:46Performance + output gap vs R DADA2 in errors-from-sample
- Issue comment#3cjfields2026-04-25 04:13Benchmarking checklists
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.