Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
active 2023-11-05 → 2026-03-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 871 days from 2023-11-05 to 2026-03-24. Pushes: 3 total, peak 2 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 18 total, peak 3 in a day. Comments: 18 total, peak 3 in a day. Stars: 9 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| HectorRDB | 23 | 3 | 1 | 12 |
| AndreaYCT | 3 | 0 | 0 | 1 |
| khsjh | 2 | 0 | 0 | 1 |
| GilbertHan1011 | 2 | 0 | 0 | 2 |
| klai001 | 1 | 0 | 0 | 0 |
| Yanst86 | 1 | 0 | 0 | 0 |
| jiw181 | 1 | 0 | 0 | 0 |
| chungsai | 1 | 0 | 0 | 0 |
| LilianGomes | 1 | 0 | 0 | 0 |
| macrophage666 | 1 | 0 | 0 | 1 |
| AAlhendi1707 | 1 | 0 | 0 | 0 |
| QINYIXIANu | 1 | 0 | 0 | 0 |
| darshanaka | 1 | 0 | 0 | 1 |
| anemartinezlarrinaga2898 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#46LilianGomes2025-11-12 00:20It it possible that slingshot sets different starting clusters for different conditions?
- Issue#45QINYIXIANu2025-10-30 12:56conditionTest() yields mostly 0 and 1 p-values (non-normal distribution)
- Issue comment#43khsjh2025-10-21 06:42Refit workflow with KRAS example
- Issue comment#44HectorRDB2025-10-05 07:52what is the best way to perform differential expression for large dataset
- Issue comment#44macrophage6662025-10-03 02:16what is the best way to perform differential expression for large dataset
- Issue comment#44HectorRDB2025-09-18 09:27what is the best way to perform differential expression for large dataset
- Issue comment#43HectorRDB2025-09-02 20:00Refit workflow with KRAS example
- Issue#43khsjh2025-09-01 02:19Refit workflow with KRAS example
- Issue comment#3AndreaYCT2025-01-21 06:14Trajectory inference multiple conditions
- Issue#40AndreaYCT2024-12-06 01:39topologyTest & topologyTest_multipleSamples
- Issue#16HectorRDB2024-12-03 19:25topologyTest() returns an error when running Classifier test
- Pull request#39HectorRDB2024-12-03 19:23
- Issue comment#38HectorRDB2024-10-18 10:58topologyTest error Error in pcurves[[l.ind]] : subscript out of bounds
- Issue#35HectorRDB2024-10-18 10:56create_differential_topology
- Issue comment#36HectorRDB2024-10-18 10:56Plotting Pseudotime Values
- Issue comment#16HectorRDB2024-10-18 10:52topologyTest() returns an error when running Classifier test
- Issue#32HectorRDB2024-10-18 10:51Discussion: When two trajectories are needed
- Issue#38jiw1812024-10-10 17:50topologyTest error Error in pcurves[[l.ind]] : subscript out of bounds
- Issue#37AndreaYCT2024-09-30 06:47recommanded p value for significant difference and conditionTest()
- Issue#36anemartinezlarrinaga28982024-09-25 10:43Plotting Pseudotime Values
- Issue#35AAlhendi17072024-08-03 14:01create_differential_topology
- Issue comment#34HectorRDB2024-06-23 20:08patternTest on separate fitGAM objects
- Issue comment#34HectorRDB2024-06-20 21:04patternTest on separate fitGAM objects
- Issue comment#16darshanaka2024-05-18 15:41topologyTest() returns an error when running Classifier test
- Issue comment#31HectorRDB2024-02-24 09:34Following vignette, no condimentsPaper package
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.