Workflow for somatic variant calling of long read data
active 2025-09-17 → 2026-07-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 304 days from 2025-09-17 to 2026-07-17. Pushes: 195 total, peak 15 in a day. Pull requests: 14 total, peak 3 in a day. Issues: 27 total, peak 4 in a day. Comments: 39 total, peak 5 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| robert-a-forsyth | 145 | 131 | 6 | 1 |
| ljwharbers | 98 | 61 | 4 | 9 |
| Copilot | 37 | 1 | 3 | 20 |
| github-actions[bot] | 8 | 0 | 0 | 8 |
| AmberVerhasselt | 6 | 2 | 1 | 0 |
| apsteinberg | 2 | 0 | 0 | 1 |
| Tim-Yu | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#159github-actions[bot]2026-04-21 11:55Deepvariant opt pon changes
- Issue comment#158github-actions[bot]2026-04-10 11:33changelog
- Issue#148ljwharbers2026-04-10 11:07Add Severus breakpoint_clusters and plots back in
- Issue#146ljwharbers2026-04-10 11:07acknowledge ASAP once its out for pon
- Issue comment#155ljwharbers2026-04-10 09:50undefined `centromere_bed` in Wakhan
- Pull request#152robert-a-forsyth2026-04-01 06:03
- Pull request#149robert-a-forsyth2026-03-31 20:11
- Issue comment#100apsteinberg2026-03-26 20:21question regarding ascat parameters
- Issue#113ljwharbers2026-03-13 08:49Add CHM13 VEP documentation
- Issue#131ljwharbers2026-03-13 08:49Add biorxiv reference
- Issue#136ljwharbers2026-03-13 08:48Document the channel structure better
- Pull request#140ljwharbers2026-03-13 08:48
- Issue comment#135github-actions[bot]2026-03-11 09:19add skip_m6a param
- Issue comment#128ljwharbers2026-03-06 09:54WAKHAN output check error
- Issue#129ljwharbers2026-03-06 09:47improve QC amount (in multiqc)
- Issue#128Tim-Yu2026-03-06 09:19WAKHAN output check error
- Issue#125AmberVerhasselt2026-02-05 19:32add raw segment txt file to ASCAT output
- Issue#125AmberVerhasselt2026-02-05 19:32add raw segment txt file to ASCAT output
- Issue#125AmberVerhasselt2026-02-05 19:32add raw segment txt file to ASCAT output
- Issue#124ljwharbers2026-01-27 16:04Haplotagged VCF files are not published
- Issue#124ljwharbers2026-01-27 16:04Haplotagged VCF files are not published
- Issue#124ljwharbers2026-01-27 16:04Haplotagged VCF files are not published
- Pull request#123robert-a-forsyth2026-01-13 08:06
- Issue comment#123github-actions[bot]2026-01-09 09:07Channel update
- Issue#121ljwharbers2025-12-30 13:26Change workflow schematic to have white background in readme.md
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.