BioKEA staging fork for upstream PRs ONLY. Nothing Biokea-specific lives here. Biokea work: BioKEA/biokea-kg (private).
active 2023-09-14 → 2026-08-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1075 days from 2023-09-14 to 2026-08-23. Pushes: 1,210 total, peak 56 in a day. Pull requests: 342 total, peak 26 in a day. Issues: 221 total, peak 13 in a day. Comments: 345 total, peak 38 in a day. Stars: 10 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| realmarcin | 855 | 453 | 103 | 74 |
| hrshdhgd | 699 | 477 | 124 | 54 |
| bsantan | 286 | 187 | 65 | 22 |
| Copilot | 214 | 14 | 23 | 130 |
| sujaypatil96 | 90 | 33 | 18 | 18 |
| turbomam | 86 | 19 | 4 | 32 |
| crocodile27 | 29 | 23 | 4 | 1 |
| caufieldjh | 14 | 3 | 1 | 10 |
| sayalaruano | 5 | 0 | 0 | 2 |
| cmungall | 2 | 0 | 0 | 1 |
| dependabot[bot] | 2 | 2 | 0 | 0 |
| Schmoho | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#866realmarcin2026-08-21 06:32PR #862's DuckDB cache keys on mtime+size, reintroducing the staleness class #844 just closed
- Issue#856realmarcin2026-08-21 02:38Reduce CLAUDE.md to durable guidance and add a tool-neutral AGENTS.md
- Issue#849realmarcin2026-08-21 02:38Stop release tooling from exposing GH_TOKEN or deleting unrelated archives
- Issue#833realmarcin2026-08-20 02:04GOLD: folding an organism with two in_taxon edges would mint a taxon→taxon subclass_of GOLD never asserted
- Issue#772realmarcin2026-08-13 19:03kg-path-review cardinality: per-transform max under-reports merged degree by ~2x; the union is exact
- Issue#753realmarcin2026-08-12 04:02METPO proposal: intra-proposal pattern-key clashes are unguarded
- Issue comment#741realmarcin2026-08-11 19:37The #688 provenance pins hardcode the column index and use short rows
- Pull request#704realmarcin2026-08-07 18:03
- Issue#707realmarcin2026-08-07 17:35ontologies: no stray-header guard on the nodes path (symmetry gap)
- Issue#705realmarcin2026-08-07 17:35ontologies: ec edges path relies on unguarded pandas index promotion
- Issue#634realmarcin2026-07-27 20:33A partial build output at the target destroys or strands the good .prev DB
- Pull request#588realmarcin2026-07-03 19:35
- Pull request#584realmarcin2026-07-02 22:34
- Pull request#582realmarcin2026-07-02 22:10
- Pull request#578realmarcin2026-07-02 21:48
- Pull request#574realmarcin2026-06-12 06:28
- Pull request#558realmarcin2026-05-02 01:59
- Issue#553turbomam2026-04-17 23:59Release asset contents and download paths are undocumented
- Issue comment#546turbomam2026-04-17 17:59Security & governance baseline: 30 Dependabot alerts, no branch protection, missing standard configs
- Issue#547turbomam2026-04-17 16:26KGX transform produces URIs with unencoded characters (:, >, °, etc.) that break downstream NT serialization
- Issue#546turbomam2026-04-17 16:17Security & governance baseline: 30 Dependabot alerts, no branch protection, missing standard configs
- Pull request#530realmarcin2026-03-22 06:37
- Pull request#530realmarcin2026-03-22 03:45
- Issue#529realmarcin2026-03-20 23:59commit exclusion_branches.tsv
- Issue#499realmarcin2026-03-19 19:56Add non-majority unmapped traits to knowledge graph.
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 10 stars here means stars gained during the window, not the repo's star count.