PHATE dimensionality reduction method implemented in R
active 2023-10-31 → 2025-09-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 697 days from 2023-10-31 to 2025-09-26. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 11 total, peak 2 in a day. Comments: 10 total, peak 2 in a day. Stars: 8 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| kmoon3 | 3 | 0 | 0 | 2 |
| janxkoci | 2 | 0 | 0 | 2 |
| CSMattison | 2 | 0 | 0 | 1 |
| bananabenana | 2 | 0 | 0 | 1 |
| Hamihema | 1 | 0 | 0 | 0 |
| sonibk | 1 | 0 | 0 | 0 |
| sameet | 1 | 0 | 0 | 0 |
| No2Ross | 1 | 0 | 0 | 1 |
| OneHitKO | 1 | 0 | 0 | 1 |
| ad2n15 | 1 | 0 | 0 | 0 |
| LiuCanidk | 1 | 0 | 0 | 1 |
| Han-zh210 | 1 | 0 | 0 | 0 |
| Tiffanyytz | 1 | 0 | 0 | 0 |
| rimmoussa | 1 | 0 | 0 | 0 |
| pengpengyang94 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#42janxkoci2025-08-15 10:50How to accelerate phate() bu using parallel computation
- Issue comment#72janxkoci2025-08-15 10:38Inquiry about Installing Package "phateR" in R
- Issue#79Hamihema2025-08-12 22:09Flow cytometry data
- Issue#78mosy5502025-07-21 13:07The issue regarding gene visualization
- Issue comment#77CSMattison2025-02-20 13:40Error in pyphate()$PHATE : $ operator is invalid for atomic vectors and 2 more
- Issue#77CSMattison2025-02-20 13:37Error in pyphate()$PHATE : $ operator is invalid for atomic vectors and 2 more
- Issue#76Han-zh2102024-12-31 13:15EB data for trajectory analysis
- Issue comment#72pengpengyang942024-11-21 08:11Inquiry about Installing Package "phateR" in R
- Issue#75ad2n152024-10-15 13:11phate running time
- Issue comment#58LiuCanidk2024-04-22 01:53PHATE parameters
- Issue#74sonibk2024-03-28 16:09Using Phate with Harmony Integration
- Issue#73sameet2024-03-25 11:47Getting keyword argument error
- Issue#72Tiffanyytz2024-03-19 19:47Inquiry about Installing Package "phateR" in R
- Issue comment#65OneHitKO2024-03-15 11:01Precomputed Affinity Matrix Read Only Error
- Issue comment#68No2Ross2023-12-11 15:59Running phate, no module named 's_gd2.swig._layout / $ operator is invalid for atomic vectors
- Issue comment#67bananabenana2023-11-01 01:21Determining highest contributing variables possible?
- Issue#67bananabenana2023-11-01 01:21Determining highest contributing variables possible?
- Issue#44kmoon32023-10-31 15:46Why does PHATE not follow standard practice for structuring gene count matrices?
- Issue comment#67kmoon32023-10-31 15:45Determining highest contributing variables possible?
- Issue comment#70kmoon32023-10-31 15:43feature loadings
- Issue#70rimmoussa2023-10-31 12:34feature loadings
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 8 stars here means stars gained during the window, not the repo's star count.