Code for the spatialLIBD R/Bioconductor package and shiny app
active 2023-09-05 → 2026-05-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 989 days from 2023-09-05 to 2026-05-20. Pushes: 219 total, peak 23 in a day. Pull requests: 34 total, peak 3 in a day. Issues: 69 total, peak 15 in a day. Comments: 97 total, peak 6 in a day. Stars: 55 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| lcolladotor | 223 | 109 | 16 | 60 |
| github-actions[bot] | 75 | 75 | 0 | 0 |
| lahuuki | 57 | 23 | 14 | 10 |
| Nick-Eagles | 18 | 11 | 3 | 2 |
| boyiguo1 | 5 | 0 | 0 | 1 |
| YikaiLou | 5 | 0 | 0 | 2 |
| soya-yaya | 4 | 0 | 0 | 4 |
| hym97 | 4 | 0 | 0 | 2 |
| sluan-jh | 4 | 0 | 0 | 3 |
| cathalgking | 3 | 0 | 0 | 2 |
| erkinacar5 | 3 | 0 | 0 | 1 |
| berniejmulvey | 3 | 0 | 0 | 2 |
| ChristineeeH | 3 | 0 | 0 | 2 |
| stemangiola | 3 | 0 | 0 | 1 |
| manishabarse | 2 | 0 | 1 | 0 |
| kinnaryshah | 2 | 0 | 0 | 1 |
| GGFranck | 2 | 0 | 0 | 0 |
| dimurali93 | 2 | 0 | 0 | 1 |
| GabrielHoffman | 1 | 0 | 0 | 1 |
| DaydreamingElephant | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#119lahuuki2025-11-25 16:18
- Pull request#118lahuuki2025-11-25 15:00
- Issue comment#105lcolladotor2025-09-17 00:48Add guide options to vis_grid_clus()
- Issue comment#115lcolladotor2025-09-17 00:47Automatically add gene_search col to rowData of pseudobulked data
- Pull request#115lcolladotor2025-09-17 00:41
- Pull request#115lahuuki2025-09-10 16:24
- Issue comment#114lcolladotor2025-07-29 18:02Miscellaneous error on https://libd.shinyapps.io/spatialLIBD/ when accessing genes (interactive)
- Issue#114matt-sd-watson2025-07-29 17:11Miscellaneous error on https://libd.shinyapps.io/spatialLIBD/ when accessing genes (interactive)
- Issue#113clauswilke2025-06-13 22:39[BUG] Reverse dependency check failure for cowplot
- Issue comment#112lcolladotor2025-06-06 17:33Improve spatial registration guide explanation of annotation
- Issue comment#76lcolladotor2025-05-21 14:23upload multiple Visium samples to the spatialLIBD shiny app
- Issue#76lcolladotor2025-05-21 14:23upload multiple Visium samples to the spatialLIBD shiny app
- Issue comment#95lcolladotor2025-05-21 14:23[BUG/clarification] Fetching pseudobulk data does not pass check_sce_layer
- Issue#95lcolladotor2025-05-21 14:22[BUG/clarification] Fetching pseudobulk data does not pass check_sce_layer
- Issue comment#84lcolladotor2025-05-21 14:20[BUG] fetch data spe failed
- Issue comment#84YuantingMaSC2025-05-20 13:34[BUG] fetch data spe failed
- Issue#111boyiguo12025-05-07 16:14Confusing warning message in spatialLIBD::gene_set_enrichment
- Issue#109manishabarse2025-04-30 17:53[BUG] modeling_results$anova is always NULL in registration_wrapper()
- Issue comment#110lcolladotor2025-04-30 17:09Fix: return results_anova to registration_wrapper()
- Pull request#110lcolladotor2025-04-30 17:08
- Pull request#110manishabarse2025-04-30 17:07
- Pull request#108lcolladotor2025-04-24 15:31
- Pull request#107lcolladotor2025-04-24 15:17
- Issue comment#106lcolladotor2025-04-22 17:55Negative log counts values from registration_pseudobulk()
- Issue comment#106kinnaryshah2025-04-22 17:49Negative log counts values from registration_pseudobulk()
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 55 stars here means stars gained during the window, not the repo's star count.