a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
active 2023-08-16 → 2026-07-09 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1059 days from 2023-08-16 to 2026-07-09. Pushes: 47 total, peak 9 in a day. Pull requests: 8 total, peak 2 in a day. Issues: 48 total, peak 8 in a day. Comments: 70 total, peak 5 in a day. Stars: 22 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| LouisFaure | 92 | 36 | 2 | 32 |
| github-actions[bot] | 10 | 10 | 0 | 0 |
| dependabot[bot] | 7 | 1 | 5 | 1 |
| hw1804 | 6 | 0 | 0 | 5 |
| tianxin-wang | 5 | 0 | 0 | 3 |
| willey2020 | 5 | 0 | 0 | 3 |
| rLannes | 4 | 0 | 0 | 2 |
| SummerColdWind | 4 | 0 | 0 | 2 |
| Fantasque68 | 4 | 0 | 0 | 3 |
| quantumdot | 3 | 0 | 0 | 1 |
| rwiegan | 3 | 0 | 0 | 3 |
| Pinpin797 | 3 | 0 | 0 | 1 |
| ChaewonKim99 | 3 | 0 | 0 | 2 |
| forrwill | 2 | 0 | 0 | 0 |
| vitkl | 2 | 0 | 0 | 1 |
| james-cranley | 2 | 0 | 0 | 1 |
| Almasimaryam | 2 | 0 | 0 | 2 |
| pmarzano97 | 1 | 0 | 0 | 0 |
| google-labs-jules[bot] | 1 | 0 | 0 | 1 |
| mcortes-lopez | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#43rwiegan2026-02-12 08:54Data points do not match dendogram structure
- Issue comment#43rwiegan2026-02-11 15:18Data points do not match dendogram structure
- Issue comment#43rwiegan2026-02-09 08:39Data points do not match dendogram structure
- Issue comment#55codecov-commenter2026-01-19 17:21Refactor to pyproject.toml and add pixi support
- Issue comment#55google-labs-jules[bot]2026-01-19 16:56Refactor to pyproject.toml and add pixi support
- Issue comment#53LouisFaure2026-01-14 19:01scf.tl.test_association(adata,n_jobs=20) doesn't work
- Issue#53LouisFaure2026-01-14 19:01scf.tl.test_association(adata,n_jobs=20) doesn't work
- Issue comment#8Dr-meng2025-12-31 06:49error in `pseudotime()`
- Pull request#51serjisa2025-12-09 14:53
- Issue#52asmlgkj2025-12-08 13:11Questions about tutorials, CellRank2 compatibility, and GPU usage
- Issue comment#49LouisFaure2025-08-31 14:32Linearity deviation assessment
- Issue comment#49yilevine2025-08-25 15:17Linearity deviation assessment
- Issue comment#47NicolasSompairac2025-08-15 17:16Pseudotime computation fails when cells_back has fewer columns than boo
- Issue comment#48LouisFaure2025-06-25 15:55`logg` is not imported in script `palette_tools.py`, which can result in error sometimes.
- Issue#48LouisFaure2025-06-25 15:55`logg` is not imported in script `palette_tools.py`, which can result in error sometimes.
- Issue comment#47tianxin-wang2025-06-10 04:01Pseudotime computation fails when cells_back has fewer columns than boo
- Issue comment#47tianxin-wang2025-06-10 02:32Pseudotime computation fails when cells_back has fewer columns than boo
- Issue comment#47tianxin-wang2025-06-09 21:04Pseudotime computation fails when cells_back has fewer columns than boo
- Issue comment#47LouisFaure2025-06-04 23:16Pseudotime computation fails when cells_back has fewer columns than boo
- Issue#47tianxin-wang2025-05-30 22:07Pseudotime computation fails when cells_back has fewer columns than boo
- Issue comment#42LouisFaure2025-05-29 03:11Save principal tree line as vector graphic .svg or .eps
- Issue#42LouisFaure2025-05-29 03:11Save principal tree line as vector graphic .svg or .eps
- Issue comment#45LouisFaure2025-05-29 03:07Error Writing adata object after single tree analysis
- Issue#45LouisFaure2025-05-29 03:07Error Writing adata object after single tree analysis
- Issue#46tianxin-wang2025-05-27 23:24scf.tl.dendrogram() hangs on final segment during dendrogram generation (likely due to large segment)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 22 stars here means stars gained during the window, not the repo's star count.