[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
active 2024-06-08 → 2026-05-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 712 days from 2024-06-08 to 2026-05-20. Pushes: 7 total, peak 4 in a day. Pull requests: 9 total, peak 6 in a day. Issues: 49 total, peak 4 in a day. Comments: 64 total, peak 8 in a day. Stars: 133 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Zhihan1996 | 68 | 6 | 7 | 33 |
| josecar24 | 6 | 0 | 0 | 5 |
| HelloWorldLTY | 5 | 0 | 0 | 3 |
| leannmlindsey | 3 | 0 | 0 | 2 |
| yuyadanyadan | 3 | 0 | 0 | 2 |
| sahiljoshi515 | 2 | 0 | 0 | 1 |
| richelbilderbeek | 2 | 0 | 1 | 1 |
| tingtingring | 2 | 0 | 0 | 1 |
| lllastronaut | 2 | 0 | 0 | 2 |
| caiyinfan | 2 | 0 | 0 | 1 |
| RobinLi7 | 2 | 0 | 0 | 0 |
| wshuai294 | 2 | 0 | 0 | 1 |
| Anshullllllll | 2 | 0 | 0 | 0 |
| ChangShaole | 1 | 0 | 0 | 0 |
| Kewei2023 | 1 | 0 | 0 | 0 |
| WeiminWu2000 | 1 | 1 | 0 | 0 |
| JackxTong | 1 | 0 | 0 | 1 |
| Wubeizhongxinghua | 1 | 0 | 0 | 0 |
| QAQ1551QAQ | 1 | 0 | 0 | 1 |
| SamuelTWu | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#152hy-00032025-09-29 02:40Transformers Version 4.29.2 is unsuitable for LoRA
- Issue#150msafari182025-08-19 01:09lr scheduler
- Issue comment#143Zhihan19962025-08-14 19:56Where is the GUE+ dataset come from?
- Issue#143Zhihan19962025-08-14 19:56Where is the GUE+ dataset come from?
- Issue comment#130dmacguigan2025-08-13 14:12RuntimeError with Shared Tensors in DNABERT-2-117M Configuration Using run_mlm.py
- Issue#148Peekaboo-ai2025-07-30 07:40Pre-training performance issue
- Issue#146rxa6152025-07-08 19:43Details about pre-train data
- Pull request#77aaron1aaron22025-06-26 10:11
- Issue comment#111Sinceter2025-06-20 09:20How to use fine tuned model for prediction?
- Issue comment#145Zhihan19962025-06-03 16:38Pretraining Hyperparameters
- Issue#144boboppie2025-06-01 17:09.bin to .safetensor on Hugging Face
- Issue#143Kewei20232025-05-08 03:19Where is the GUE+ dataset come from?
- Issue comment#125lllastronaut2025-04-15 02:45finetune results seems not very stable
- Issue comment#125lllastronaut2025-04-15 02:39finetune results seems not very stable
- Issue#142ssdadeq2025-03-30 03:36经过处理后的seqlen长度不统一如何处理
- Issue comment#63sahiljoshi5152025-03-22 23:32Wrong tokens at the end of the sequence
- Issue#140sahiljoshi5152025-03-22 23:26Getting triton compiler error while running the inference code mentioned in the README.
- Issue#133zhujunru8542025-03-18 02:17ValueError: Please specify target_modules in peft_config
- Issue comment#139tingtingring2025-03-11 06:57The model cannot be fixed by the seed
- Issue comment#139Zhihan19962025-03-11 04:08The model cannot be fixed by the seed
- Issue#139Zhihan19962025-03-11 04:08The model cannot be fixed by the seed
- Issue#139tingtingring2025-03-11 03:44The model cannot be fixed by the seed
- Issue comment#131Zhihan19962025-01-10 23:26全基因组的注释任务
- Issue comment#132wshuai2942025-01-10 23:26Is it possible for regression tasks?
- Issue#131Zhihan19962025-01-10 23:26全基因组的注释任务
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 133 stars here means stars gained during the window, not the repo's star count.