MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
active 2023-08-25 → 2026-02-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 898 days from 2023-08-25 to 2026-02-07. Pushes: 0 total, peak 0 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 12 total, peak 1 in a day. Comments: 15 total, peak 3 in a day. Stars: 115 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| bnestor | 4 | 0 | 0 | 2 |
| majedov | 3 | 0 | 2 | 0 |
| mmcdermott | 3 | 0 | 0 | 2 |
| sanh2o | 2 | 0 | 0 | 2 |
| mahmoudibrahim98 | 2 | 0 | 0 | 0 |
| Chipsovo | 1 | 0 | 0 | 0 |
| kovnew | 1 | 0 | 0 | 1 |
| knutj | 1 | 0 | 0 | 0 |
| hsfbxzj | 1 | 0 | 0 | 1 |
| WJHszx | 1 | 0 | 0 | 1 |
| qixuan-code | 1 | 0 | 0 | 1 |
| betternichole | 1 | 0 | 0 | 1 |
| ranchen01 | 1 | 0 | 0 | 1 |
| houchenyu | 1 | 0 | 0 | 1 |
| hsientani-ai | 1 | 0 | 0 | 1 |
| zhaohan-xi | 1 | 0 | 0 | 0 |
| yezhengli-Mr9 | 1 | 0 | 0 | 0 |
| Mairafatoretto | 1 | 0 | 0 | 1 |
| jamin-chen | 1 | 0 | 0 | 0 |
| Wenxin-Elmon-Chen | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#84hsientani-ai2026-02-07 05:05Accessing MIMIC-Extract After GCP Bucket Deprecation
- Issue comment#83hsfbxzj2026-01-04 15:14Lack the "storage.objects.list" permission to access the preprocessed data in the Google Bucket.
- Issue#48jamin-chen2025-10-27 16:55KeyError: 'subject_id" when calling pd.DataFrame.pivot_table in mortality / LOS baseline
- Issue#84Wenxin-Elmon-Chen2025-09-09 19:49Accessing MIMIC-Extract After GCP Bucket Deprecation
- Issue comment#80ranchen012025-08-26 02:31关于ECGNN代码相关
- Issue comment#80WJHszx2025-08-26 02:09关于ECGNN代码相关
- Issue comment#76kovnew2025-03-28 03:25Is the preprocessed data in google bucket still available?
- Issue comment#15sanh2o2024-11-04 14:02Are there different versions of `all_hourly_data.h5` ?
- Issue comment#15mmcdermott2024-11-04 13:47Are there different versions of `all_hourly_data.h5` ?
- Issue comment#15mmcdermott2024-11-04 13:44Are there different versions of `all_hourly_data.h5` ?
- Issue#15mmcdermott2024-11-04 13:44Are there different versions of `all_hourly_data.h5` ?
- Issue comment#15sanh2o2024-11-03 03:34Are there different versions of `all_hourly_data.h5` ?
- Issue#81knutj2024-10-03 09:11missing mimic_extract_env_py36.yml
- Issue#80Chipsovo2024-10-02 17:17关于ECGNN代码相关
- Issue comment#52betternichole2024-08-20 15:19The shape of extrated data is diff to the notebook
- Issue comment#15Mairafatoretto2024-07-25 12:56Are there different versions of `all_hourly_data.h5` ?
- Pull request#79majedov2024-07-18 06:50
- Pull request#78majedov2024-07-15 09:01
- Issue#77majedov2024-07-15 07:50README update
- Issue#76zhaohan-xi2024-05-26 04:36Is the preprocessed data in google bucket still available?
- Issue comment#30bnestor2024-03-18 14:54MIMIC-Extract for MIMIC-IV
- Issue#30bnestor2024-03-18 14:54MIMIC-Extract for MIMIC-IV
- Issue#75mahmoudibrahim982024-02-21 12:53Is it possible to change the frequency from 1 hour to 15 minutes for example?
- Issue#75mahmoudibrahim982024-02-09 17:01Is it possible to change the frequency from 1 hour to 15 minutes for example?
- Issue comment#68bnestor2023-12-29 20:40Why 3 and 7 days are selected for LOS?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 115 stars here means stars gained during the window, not the repo's star count.