A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
active 2025-06-18 → 2026-08-18 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 427 days from 2025-06-18 to 2026-08-18. Pushes: 50 total, peak 7 in a day. Pull requests: 25 total, peak 4 in a day. Issues: 8 total, peak 2 in a day. Comments: 6 total, peak 1 in a day. Stars: 1 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| m-jahn | 65 | 40 | 15 | 2 |
| github-actions[bot] | 23 | 9 | 10 | 4 |
| rabioinf | 3 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#34github-actions[bot]2026-03-30 13:11
- Issue#30m-jahn2026-02-12 12:15update GH actions workflows, particularly superlinter -> v8
- Issue#29m-jahn2025-12-18 14:13apptainer deployment workflow currently defunct due to spython bug
- Issue#29m-jahn2025-12-18 14:13apptainer deployment workflow currently defunct due to spython bug
- Issue comment#25github-actions[bot]2025-12-18 14:04chore(main): release 1.5.0
- Pull request#25github-actions[bot]2025-12-18 14:04
- Pull request#25github-actions[bot]2025-12-18 14:04
- Pull request#27m-jahn2025-12-12 08:04
- Pull request#27m-jahn2025-12-12 08:04
- Pull request#25github-actions[bot]2025-12-11 14:37
- Pull request#24m-jahn2025-12-11 14:37
- Releasegithub-actions[bot]2025-12-11 10:59v1.4.2
- Pull request#23github-actions[bot]2025-12-11 10:59
- Pull request#22m-jahn2025-10-20 14:03
- Issue comment#21github-actions[bot]2025-09-25 08:54chore(main): release 1.4.1
- Pull request#21github-actions[bot]2025-09-25 08:36
- Pull request#20m-jahn2025-09-25 08:35
- Pull request#20m-jahn2025-09-19 09:46
- Releasegithub-actions[bot]2025-09-17 12:20v1.4.0
- Pull request#19github-actions[bot]2025-09-17 12:19
- Issue#15m-jahn2025-09-17 12:19add minimap2 as a long read mapper option
- Issue#14m-jahn2025-09-17 12:19add STAR as a third mapper option
- Pull request#18m-jahn2025-09-16 11:36
- Issue comment#17m-jahn2025-09-16 09:44add an option to downsample reads for testing etc
- Pull request#16github-actions[bot]2025-09-15 07:17
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 1 stars here means stars gained during the window, not the repo's star count.