Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
active 2023-08-18 → 2026-05-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1013 days from 2023-08-18 to 2026-05-26. Pushes: 26 total, peak 4 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 31 total, peak 7 in a day. Comments: 52 total, peak 7 in a day. Stars: 25 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| lachmann12 | 72 | 25 | 1 | 32 |
| robinpaul85 | 10 | 0 | 0 | 5 |
| yihming | 6 | 0 | 0 | 4 |
| stevendbrown | 6 | 0 | 2 | 4 |
| Zethson | 5 | 0 | 0 | 4 |
| josephpowi | 3 | 0 | 0 | 1 |
| polrus | 2 | 0 | 0 | 0 |
| votti | 2 | 0 | 0 | 2 |
| terynin | 1 | 0 | 0 | 0 |
| a-bird28 | 1 | 0 | 0 | 0 |
| tom-gome | 1 | 0 | 0 | 0 |
| u8sand | 1 | 1 | 0 | 0 |
| bli25 | 1 | 0 | 0 | 0 |
| chienhsiang | 1 | 0 | 0 | 0 |
| jacqueline-alector | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#42terynin2025-10-17 17:08ZeroDivisionError with small signature sets (<100)
- Issue#41robinpaul852025-05-27 21:45Gene set size?
- Issue comment#40lachmann122025-05-16 21:55Non reproducible run time error from scipy
- Issue#40robinpaul852025-05-16 21:28Non reproducible run time error from scipy
- Issue#39josephpowi2025-04-17 13:54ValueError: The function value at x=-1351079888211148.8 is NaN; solver cannot continue.
- Issue comment#39josephpowi2025-04-16 16:49ValueError: The function value at x=-1351079888211148.8 is NaN; solver cannot continue.
- Issue comment#39lachmann122025-04-16 15:37ValueError: The function value at x=-1351079888211148.8 is NaN; solver cannot continue.
- Issue#39josephpowi2025-04-15 21:59ValueError: The function value at x=-1351079888211148.8 is NaN; solver cannot continue.
- Issue#38lachmann122025-03-24 13:59Seed type error in gsea
- Releaselachmann122025-03-24 13:581.3.49 - stable
- Issue comment#38lachmann122025-02-25 20:35Seed type error in gsea
- Issue#38a-bird282025-02-25 17:28Seed type error in gsea
- Issue comment#36lachmann122025-02-24 20:24Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#36lachmann122025-02-12 16:37Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#36lachmann122025-02-12 16:32Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#36robinpaul852025-02-04 21:57Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#37stevendbrown2025-01-03 19:46use NumPy RandomState object for shuffling in get_peak_size_adv
- Pull request#37stevendbrown2025-01-03 19:46
- Issue comment#36stevendbrown2025-01-03 19:45Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#37stevendbrown2025-01-03 18:57use NumPy RandomState object for shuffling in get_peak_size_adv
- Pull request#37stevendbrown2024-12-30 20:55
- Issue comment#36stevendbrown2024-12-19 17:03Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#36robinpaul852024-11-01 21:39Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#36lachmann122024-10-22 20:25Normalized enrichment score = negative infinity and results not reproducible across different computers
- Issue comment#36lachmann122024-10-22 20:25Normalized enrichment score = negative infinity and results not reproducible across different computers
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 25 stars here means stars gained during the window, not the repo's star count.