python tools to perform data parsing and image stitching on microscopy data
active 2023-09-11 → 2026-03-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 918 days from 2023-09-11 to 2026-03-16. Pushes: 97 total, peak 10 in a day. Pull requests: 10 total, peak 3 in a day. Issues: 10 total, peak 2 in a day. Comments: 8 total, peak 2 in a day. Stars: 5 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| sophiamaedler | 118 | 95 | 4 | 7 |
| dependabot[bot] | 6 | 0 | 6 | 0 |
| michaelquez97 | 2 | 0 | 0 | 1 |
| mBiocoder | 2 | 2 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#15dependabot[bot]2026-03-16 02:03
- Pull request#14dependabot[bot]2025-11-24 02:04
- Pull request#14dependabot[bot]2025-11-24 02:04
- Pull request#14dependabot[bot]2025-11-24 02:04
- Issue#11sophiamaedler2025-01-27 14:53reduce print output for stitching
- Issue#12sophiamaedler2024-10-07 12:18More info on parse_phenix_40X
- Issue comment#12michaelquez972024-10-02 13:06More info on parse_phenix_40X
- Issue comment#12sophiamaedler2024-10-01 21:24More info on parse_phenix_40X
- Issue#12michaelquez972024-09-30 12:59More info on parse_phenix_40X
- Issue comment#4sophiamaedler2024-06-29 07:56Automatically add blank images for missing tiles
- Issue#4sophiamaedler2024-06-29 07:56Automatically add blank images for missing tiles
- Issue comment#7sophiamaedler2024-06-29 07:56Automatically check if rescaling is a dict that all channels which are required are present
- Issue#7sophiamaedler2024-06-29 07:56Automatically check if rescaling is a dict that all channels which are required are present
- Issue#11sophiamaedler2024-06-26 14:29reduce print output for stitching
- Issue comment#4sophiamaedler2024-05-27 09:33Automatically add blank images for missing tiles
- Issue comment#7sophiamaedler2024-05-27 09:33Automatically check if rescaling is a dict that all channels which are required are present
- Issue#10sophiamaedler2024-05-06 12:08implement test cases for all functions
- Issue comment#8sophiamaedler2024-05-06 12:04implement conda as an install option
- Issue comment#4sophiamaedler2024-05-06 12:01Automatically add blank images for missing tiles
- Issue#9sophiamaedler2024-04-22 10:02create a test script to check if installation is functional and make it accessible via simple python command
- Issue#7sophiamaedler2024-04-22 09:54Automatically check if rescaling is a dict that all channels which are required are present
- Pull request#6sophiamaedler2024-04-17 11:23
- Pull request#6sophiamaedler2024-04-17 11:23
- Pull request#5sophiamaedler2024-04-17 11:22
- Pull request#5dependabot[bot]2024-03-18 02:28
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.