DeepMicrobes: taxonomic classification for metagenomics with deep learning
active 2024-05-14 → 2026-01-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 627 days from 2024-05-14 to 2026-01-30. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 6 total, peak 1 in a day. Comments: 18 total, peak 3 in a day. Stars: 11 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| MicrobeLab | 10 | 0 | 0 | 10 |
| Gayathri142 | 6 | 0 | 0 | 5 |
| yongrenr | 2 | 0 | 0 | 1 |
| ChillarAnand | 2 | 0 | 0 | 2 |
| isilayc | 1 | 0 | 0 | 0 |
| XLOXL | 1 | 0 | 0 | 0 |
| JiayiJennie | 1 | 0 | 0 | 0 |
| Praneet-Prabhanjan | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#40MicrobeLab2025-09-07 01:59Issues with vocabulary file
- Issue#40isilayc2025-09-04 11:51Issues with vocabulary file
- Issue comment#39MicrobeLab2025-04-19 09:35预测过程中GPU使用的问题
- Issue#39yongrenr2025-04-16 02:27预测过程中GPU使用的问题
- Issue comment#32ChillarAnand2024-11-06 04:02How should I run this model in single-end mode?
- Issue comment#32MicrobeLab2024-10-21 05:11How should I run this model in single-end mode?
- Issue comment#32ChillarAnand2024-10-20 15:52How should I run this model in single-end mode?
- Issue comment#28Gayathri1422024-09-09 04:28Error occurred during model training.
- Issue comment#28Gayathri1422024-09-06 05:22Error occurred during model training.
- Issue comment#28MicrobeLab2024-09-06 04:53Error occurred during model training.
- Issue comment#28Gayathri1422024-09-06 04:45Error occurred during model training.
- Issue comment#37MicrobeLab2024-08-03 08:15Inquiry Regarding DeepMicrobes Installation and Usage
- Issue#37Praneet-Prabhanjan2024-08-02 05:16Inquiry Regarding DeepMicrobes Installation and Usage
- Issue comment#36MicrobeLab2024-07-31 07:18The use of Benchmark Dataset
- Issue#36JiayiJennie2024-07-29 04:21The use of Benchmark Dataset
- Issue comment#35MicrobeLab2024-06-22 02:02Training on multiple genomes
- Issue comment#35Gayathri1422024-06-21 17:50Training on multiple genomes
- Issue comment#35MicrobeLab2024-06-20 06:52Training on multiple genomes
- Issue#35Gayathri1422024-06-20 06:41Training on multiple genomes
- Issue comment#34MicrobeLab2024-05-24 03:44Something about "subset*.tfrec"
- Issue comment#34yongrenr2024-05-23 03:11Something about "subset*.tfrec"
- Issue comment#32Gayathri1422024-05-20 23:32How should I run this model in single-end mode?
- Issue comment#33MicrobeLab2024-05-14 05:43About train_epoch
- Issue#33XLOXL2024-05-14 05:32About train_epoch
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 11 stars here means stars gained during the window, not the repo's star count.