ShortStack: Comprehensive annotation and quantification of small RNA genes
active 2023-08-15 → 2026-02-09 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 910 days from 2023-08-15 to 2026-02-09. Pushes: 45 total, peak 9 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 71 total, peak 8 in a day. Comments: 108 total, peak 12 in a day. Stars: 17 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| MikeAxtell | 142 | 45 | 2 | 63 |
| kubu4 | 17 | 0 | 0 | 9 |
| joweihsieh | 13 | 0 | 0 | 9 |
| baibhav-bioinfo | 8 | 0 | 0 | 6 |
| Aez35 | 4 | 0 | 1 | 1 |
| rmr74370 | 3 | 0 | 0 | 2 |
| kaspartom | 3 | 0 | 0 | 2 |
| joncahn | 3 | 0 | 0 | 2 |
| mikrzol | 3 | 0 | 0 | 2 |
| meerveld96 | 3 | 0 | 0 | 1 |
| Maja-nib | 2 | 0 | 0 | 1 |
| FlaviaPavan | 2 | 0 | 0 | 1 |
| nponts | 2 | 0 | 0 | 1 |
| lucacozzuto | 2 | 0 | 0 | 1 |
| KaasBallard | 2 | 0 | 0 | 2 |
| dirkjanvw | 1 | 0 | 0 | 1 |
| aayoungfish | 1 | 0 | 0 | 0 |
| KJeynesCupper | 1 | 0 | 0 | 0 |
| AlexSaraz1 | 1 | 0 | 0 | 1 |
| Simson896 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#177MikeAxtell2026-02-09 16:46Add option for 0 mismatch with bowtie1
- Issue#175MikeAxtell2026-02-09 16:44known miRNAs and bigwig options are not working
- Issue#176JavierRamos012025-12-06 20:48Questions Regarding sRNA Clusters and Differential Expression
- Issue comment#175MikeAxtell2025-12-05 16:53known miRNAs and bigwig options are not working
- Issue#175cuperusj2025-12-04 22:00known miRNAs and bigwig options are not working
- Issue comment#174joncahn2025-10-24 23:36Error when no de novo microRNA are found
- Issue comment#174MikeAxtell2025-10-23 19:54Error when no de novo microRNA are found
- Issue comment#174joncahn2025-10-20 17:45Error when no de novo microRNA are found
- Issue#174joncahn2025-10-17 21:34Error when no de novo microRNA are found
- Issue comment#173lemon02052025-07-23 14:54Severe drop in number of clusters after upgrading from v3.8.5 to v4.1.2
- Issue comment#173MikeAxtell2025-07-23 12:47Severe drop in number of clusters after upgrading from v3.8.5 to v4.1.2
- Issue#173lemon02052025-07-22 12:45Severe drop in number of clusters after upgrading from v3.8.5 to v4.1.2
- Issue comment#172MikeAxtell2025-06-11 18:49Analysis freezes when its starts to send the chromosomes for anaylisis
- Issue comment#161MikeAxtell2025-05-24 14:59Better reporting when --autotrim fails to trim
- Issue#161MikeAxtell2025-05-24 14:59Better reporting when --autotrim fails to trim
- Issue comment#171MikeAxtell2025-05-23 19:21Issue with GNU vs BSD sed
- Issue#171MikeAxtell2025-05-23 19:19Issue with GNU vs BSD sed
- Pull request#137MikeAxtell2025-05-23 19:14
- Issue#171Aez352025-05-13 19:12Issue with GNU vs BSD sed
- Issue comment#170lucacozzuto2025-05-12 17:07Trimming results in a table
- Issue comment#170MikeAxtell2025-05-12 16:05Trimming results in a table
- Issue comment#168MikeAxtell2025-05-12 15:51BAM file, --min_cov, and --pad
- Issue#167MikeAxtell2025-05-12 15:23using shortstack in mac os terminal giving sed error
- Issue#164MikeAxtell2025-05-12 15:18siRNA analysis using ShortStack
- Issue#170lucacozzuto2025-05-06 18:43Trimming results in a table
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 17 stars here means stars gained during the window, not the repo's star count.