Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
active 2023-08-15 → 2026-07-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1065 days from 2023-08-15 to 2026-07-14. Pushes: 18 total, peak 4 in a day. Pull requests: 35 total, peak 5 in a day. Issues: 37 total, peak 7 in a day. Comments: 79 total, peak 10 in a day. Stars: 9 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ANRudrapatna | 80 | 8 | 23 | 30 |
| FaizRizvi | 38 | 6 | 4 | 15 |
| XiaotingChen | 26 | 2 | 6 | 7 |
| zhujunru854 | 19 | 0 | 0 | 12 |
| emiraldi | 9 | 2 | 1 | 3 |
| tacazares | 7 | 0 | 0 | 4 |
| Lozzard | 3 | 0 | 0 | 1 |
| Pirhhot | 3 | 0 | 1 | 1 |
| sleepryansleep | 3 | 0 | 0 | 1 |
| drosop | 2 | 0 | 0 | 1 |
| Elfaba | 2 | 0 | 0 | 1 |
| martinezvbs | 2 | 0 | 0 | 0 |
| 2020guotao | 2 | 0 | 0 | 1 |
| plger | 1 | 0 | 0 | 0 |
| simontimmins | 1 | 0 | 0 | 1 |
| bjstewart1 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#153ANRudrapatna2025-08-02 10:50Error in convert_fragments_to_tn5_bed
- Issue comment#151ANRudrapatna2025-05-20 18:45FIle not found error when updating maxatac_data_path in constants.py
- Issue#151ANRudrapatna2025-05-20 18:45FIle not found error when updating maxatac_data_path in constants.py
- Issue comment#153Pirhhot2025-05-01 16:23Error in convert_fragments_to_tn5_bed
- Issue#153Pirhhot2025-05-01 16:20Error in convert_fragments_to_tn5_bed
- Pull request#152Pirhhot2025-05-01 15:52
- Issue#150zhujunru8542025-04-09 13:31Code for Model Interpretation
- Issue#148zhujunru8542025-04-07 10:35Issues encountered in ChIP-seq data processing.
- Issue comment#149XiaotingChen2025-04-04 13:10couldn't reproduce the results
- Issue#149XiaotingChen2025-04-04 13:10couldn't reproduce the results
- Issue comment#149zhujunru8542025-03-31 13:44couldn't reproduce the results
- Issue comment#149FaizRizvi2025-03-28 20:29couldn't reproduce the results
- Issue comment#148zhujunru8542025-03-28 09:52Issues encountered in ChIP-seq data processing.
- Issue comment#149zhujunru8542025-03-28 02:24couldn't reproduce the results
- Issue comment#148tacazares2025-03-28 00:40Issues encountered in ChIP-seq data processing.
- Issue comment#148FaizRizvi2025-03-27 23:38Issues encountered in ChIP-seq data processing.
- Issue comment#132FaizRizvi2025-03-27 21:20clarification on the ChIP-seq bigwig needed for training
- Issue comment#149FaizRizvi2025-03-27 21:07couldn't reproduce the results
- Issue comment#132zhujunru8542025-03-25 05:43clarification on the ChIP-seq bigwig needed for training
- Issue#108tacazares2025-03-24 03:24Add code for plots/update functions associated with `normalize`, `average`, `prepare`, and `benchmark`
- Issue#31tacazares2025-03-24 03:23Bayesian Optimization
- Issue#104tacazares2025-03-24 03:23Add tests and set up some Continuous Integration (CI)
- Issue comment#148zhujunru8542025-03-24 02:33Issues encountered in ChIP-seq data processing.
- Issue comment#148ANRudrapatna2025-03-21 20:41Issues encountered in ChIP-seq data processing.
- Issue comment#132zhujunru8542025-03-20 08:43clarification on the ChIP-seq bigwig needed for training
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.