a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Python · active 2025-03-08 → 2026-06-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 465 days from 2025-03-08 to 2026-06-15. Pushes: 78 total, peak 10 in a day. Pull requests: 46 total, peak 2 in a day. Issues: 176 total, peak 9 in a day. Comments: 245 total, peak 14 in a day. Stars: 268 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mrariden | 209 | 41 | 20 | 97 |
| carsen-stringer | 45 | 35 | 0 | 5 |
| Jiadalee | 10 | 0 | 0 | 5 |
| vadori | 8 | 0 | 0 | 4 |
| postnubilaphoebus | 7 | 0 | 0 | 6 |
| codecov[bot] | 7 | 0 | 0 | 7 |
| romainGuiet | 7 | 0 | 0 | 5 |
| derekthirstrup | 6 | 0 | 1 | 3 |
| MarinManuel | 6 | 0 | 1 | 2 |
| Lu-Ying04 | 5 | 0 | 0 | 4 |
| YuanningEric | 5 | 0 | 0 | 2 |
| camlloyd | 4 | 0 | 1 | 1 |
| VipProCute | 4 | 0 | 0 | 3 |
| souryasengupta | 4 | 0 | 0 | 3 |
| melonora | 3 | 0 | 0 | 3 |
| OratHelm | 3 | 0 | 0 | 1 |
| marius10p | 3 | 0 | 0 | 3 |
| ZhaomingPsych | 3 | 0 | 0 | 2 |
| yueqin-sysbio | 3 | 0 | 0 | 1 |
| cgoina | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue#1473Heime-Jorgen2026-06-15 15:45K-Lean: machine-verified contracts for biological image analysis
- Issue#1312carsen-stringer2026-06-09 12:24[FEATURE] patch-wise diameter estimation for large or heterogeneous images
- Issue comment#1460mrariden2026-05-27 21:12Efficient batched 2D inference by pooling tiles across images
- Issue#1455Kartoffelecke2026-05-17 21:07[BUG] Cellpose CLI uses CPU when --gpu_device mps is specified
- Issue#1455Kartoffelecke2026-05-17 21:07[BUG] Cellpose CLI uses CPU when --gpu_device mps is specified
- Issue#1452mrariden2026-05-13 15:29[BUG] Filter button not correctly filtering image
- Issue comment#1435carsen-stringer2026-05-10 01:35[FEATURE] discussion with dynamic efficiency improvement
- Pull request#1432mrariden2026-04-09 22:27
- Issue#1430yuu3422026-04-08 01:33the problem when using the cellpose 4
- Issue#1430yuu3422026-04-08 01:33the problem when using the cellpose 4
- Issue comment#1379mrariden2026-03-18 20:12Fix to issue #1375 to make it also zarr v3 compatible
- Issue comment#1398derekthirstrup2026-03-11 21:06[BUG] Cellpose 3D Ring Artifacts Problem & Solution
- Issue comment#1276Umaarasu2026-03-11 07:51[BUG] Cellpose model fails on parts of image
- Issue#1398mrariden2026-03-10 20:11[BUG] Cellpose 3D Ring Artifacts Problem & Solution
- Issue comment#1408mrariden2026-03-10 09:51add support for anisotropic values of the flow3D_smooth
- Pull request#1409mrariden2026-03-02 19:42
- Pull request#1411qin-yu2026-03-02 15:38
- Issue comment#1267stikos2026-02-27 21:51Target recognition for cell membrane staining in IHC(DAB) produces different results using different channels(Cellpose 4.0)
- Pull request#1410qin-yu2026-02-24 15:32
- Pull request#1409mrariden2026-02-23 20:34
- Issue comment#1276DarioS2026-02-18 05:00[BUG] Cellpose model fails on parts of image
- Pull request#1406tlambert032026-02-14 16:36
- Issue comment#1404vadori2026-02-10 09:04Clarification / potential bug: grayscale → RGB conversion does not replicate non-zero channel across 3 channels
- Issue#1404vadori2026-02-10 09:04Clarification / potential bug: grayscale → RGB conversion does not replicate non-zero channel across 3 channels
- Issue comment#1403mrariden2026-02-09 17:01Update return tuple in 'eval' function documentation
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 268 stars here means stars gained during the window, not the repo's star count.