Rapid comparison and dereplication of genomes
active 2023-08-18 → 2026-06-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1048 days from 2023-08-18 to 2026-06-30. Pushes: 14 total, peak 6 in a day. Pull requests: 7 total, peak 2 in a day. Issues: 141 total, peak 10 in a day. Comments: 242 total, peak 12 in a day. Stars: 117 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| MrOlm | 196 | 14 | 2 | 125 |
| rrohwer | 10 | 0 | 0 | 6 |
| kevinmyers | 9 | 0 | 0 | 6 |
| neptuneyt | 8 | 0 | 0 | 7 |
| vsanchez0 | 7 | 0 | 0 | 6 |
| paulzierep | 6 | 0 | 0 | 5 |
| Wanli-HE | 6 | 0 | 0 | 6 |
| Zlouisson1 | 5 | 0 | 0 | 4 |
| pengfeimm | 5 | 0 | 0 | 2 |
| huizhen-yan | 5 | 0 | 0 | 4 |
| AprilJauhal | 5 | 0 | 0 | 5 |
| Chandrasekaran-J | 5 | 0 | 0 | 3 |
| aretchless | 5 | 0 | 0 | 2 |
| yigezi0408 | 4 | 0 | 0 | 3 |
| brennenohunt | 4 | 0 | 0 | 2 |
| Sumsarium | 4 | 0 | 0 | 2 |
| MundaneAD | 4 | 0 | 0 | 2 |
| MingyueCheng | 4 | 0 | 0 | 3 |
| hellopeccat | 4 | 0 | 0 | 2 |
| songmj86 | 4 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#220MrOlm2026-06-30 22:22Steps to implement checkm2 quality report to dRep
- Issue#220MrOlm2026-06-30 22:22Steps to implement checkm2 quality report to dRep
- Issue#297ShyGuy5092026-02-10 08:09Pandas dependency v3.0.0 vs v2.3.3
- Issue#296levlafayette2026-01-29 02:39Releases?
- Issue#295mcmahon-uw2026-01-09 17:27Alignment threshold and secondary cluster assignments - not sure it's working properly?
- Issue#294mrraoyz2025-11-28 02:12Is it possible to skip running checkM after manually input a genome quality table converted from CheckM2?
- Issue comment#294mrraoyz2025-11-28 02:12Is it possible to skip running checkM after manually input a genome quality table converted from CheckM2?
- Issue comment#188MengxueZHANG01202025-11-27 07:56Passing checkM input, but dRep is still running checkM?
- Issue comment#284Cczyf2025-11-20 15:38DOUBLE CRITICAL ERROR AGAIN WITH PRIMARY CLUSTER
- Issue#294mrraoyz2025-11-20 02:40Is it possible to skip running checkM after manually input a genome quality table converted from CheckM2?
- Pull request#292Prunoideae2025-11-05 14:02
- Issue#291MrOlm2025-11-05 13:38CheckM stucks when more than 64 threads are given
- Issue#290shiraz-shah2025-10-01 07:43Installation with pip doesn't get all dependencies
- Issue#289shiraz-shah2025-10-01 07:39How to reuse prodigal output from independent checkM run
- Issue comment#288MrOlm2025-09-28 14:19Regarding --low_ram_primary_clustering, the error message shows OSError: [Errno 7] Argument list too long
- Issue comment#288QiaofanLi2025-09-27 15:57Regarding --low_ram_primary_clustering, the error message shows OSError: [Errno 7] Argument list too long
- Issue comment#288MrOlm2025-09-27 13:55Regarding --low_ram_primary_clustering, the error message shows OSError: [Errno 7] Argument list too long
- Issue#288QiaofanLi2025-09-27 07:38Regarding --low_ram_primary_clustering, the error message shows OSError: [Errno 7] Argument list too long
- Issue comment#96arijitnus2025-09-22 19:22fastANI is not working
- Issue comment#96MrOlm2025-09-22 19:12fastANI is not working
- Issue comment#96arijitnus2025-09-22 18:49fastANI is not working
- Issue#287ZhaosuSong2025-09-21 15:52Question about using pre-computed CheckM results with dRep
- Issue comment#286MrOlm2025-09-21 13:17!!! checkM failed !!!but run CheckM separately, it works
- Issue#286MrOlm2025-09-21 13:17!!! checkM failed !!!but run CheckM separately, it works
- Issue#286ZhaosuSong2025-09-21 07:17!!! checkM failed !!!but run CheckM separately, it works
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 117 stars here means stars gained during the window, not the repo's star count.