Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).
active 2023-08-16 → 2025-03-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 592 days from 2023-08-16 to 2025-03-29. Pushes: 208 total, peak 12 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 18 total, peak 14 in a day. Comments: 6 total, peak 2 in a day. Stars: 9 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Formanj-0 | 145 | 127 | 1 | 3 |
| luisub | 53 | 51 | 0 | 1 |
| ericron | 24 | 22 | 1 | 0 |
| Munsky | 8 | 8 | 0 | 0 |
| dmitrisvetlov | 2 | 0 | 0 | 1 |
| gagayuan | 1 | 0 | 0 | 1 |
| saramoein372 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#2gagayuan2025-02-10 06:30Nonetype error occuring in second image
- Issue comment#19dmitrisvetlov2024-10-25 23:39Develop Conda environment for Terminator computer
- Issue comment#19Formanj-02024-10-23 17:45Develop Conda environment for Terminator computer
- Issue#19dmitrisvetlov2024-10-22 03:24Develop Conda environment for Terminator computer
- Pull request#18Formanj-02024-10-03 17:13
- Issue#7Formanj-02024-09-12 17:58Build testing compiler
- Issue comment#17Formanj-02024-09-12 16:19Refactor pipeline step, prepipline step and postpipeline steps to better names
- Issue#17Formanj-02024-09-12 16:19Refactor pipeline step, prepipline step and postpipeline steps to better names
- Issue#16Formanj-02024-09-12 16:18Seperate Steps into seperate .py files
- Issue#15Formanj-02024-09-12 16:11Build Cell property extraction step
- Issue#14Formanj-02024-09-12 16:10Build Parameter testing Steps
- Issue#13Formanj-02024-09-12 16:09Send Multiple Pipeline folders of the same data
- Issue comment#12Formanj-02024-09-12 15:57Rework Step Class
- Issue#12Formanj-02024-09-12 15:56Rework Step Class
- Issue#11Formanj-02024-09-12 15:52Build parallel Pipeline
- Issue#10Formanj-02024-09-12 15:50Create Spot Simulations
- Issue#9Formanj-02024-09-12 15:46Build systematic testing of individual steps
- Issue#8Formanj-02024-09-12 15:45Build test
- Issue#7Formanj-02024-09-12 15:43Build testing compiler
- Issue#6Formanj-02024-09-12 15:40Build examples folder
- Issue#5Formanj-02024-09-12 15:38Build a table of pipeline step parameters
- Issue#4luisub2024-08-21 15:15BigFISH Spot Decomposition mixup
- Issue comment#4luisub2024-08-21 15:14BigFISH Spot Decomposition mixup
- Issue#4ericron2024-08-21 14:54BigFISH Spot Decomposition mixup
- Pull request#3ericron2024-08-19 22:55
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.