NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities is available in sourceforge (https://sourceforge.net/p/ngsep/wiki/Home/).
active 2023-08-16 → 2026-06-03 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1023 days from 2023-08-16 to 2026-06-03. Pushes: 206 total, peak 10 in a day. Pull requests: 15 total, peak 2 in a day. Issues: 8 total, peak 1 in a day. Comments: 12 total, peak 2 in a day. Stars: 25 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| jduitama | 199 | 186 | 8 | 3 |
| MrCheesyBurgerU | 13 | 8 | 5 | 0 |
| vparrac | 12 | 11 | 1 | 0 |
| diriano | 4 | 0 | 0 | 3 |
| kcleal | 3 | 0 | 0 | 1 |
| Rem1burwell | 3 | 0 | 0 | 1 |
| ngaitan55 | 2 | 0 | 0 | 2 |
| seb-mueller | 2 | 0 | 0 | 2 |
| drhoads | 1 | 0 | 0 | 0 |
| Rapsssito | 1 | 0 | 1 | 0 |
| lngonzalezg | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#53diriano2025-05-08 16:38Out of memory
- Issue comment#53diriano2025-05-08 16:32Out of memory
- Issue#59drhoads2025-04-27 16:30Java crash
- Pull request#58jduitama2025-04-23 15:09
- Pull request#58MrCheesyBurgerU2025-04-22 19:20
- Pull request#57jduitama2025-04-04 15:58
- Pull request#57MrCheesyBurgerU2025-04-04 03:02
- Issue comment#53diriano2025-03-14 18:58Out of memory
- Pull request#56jduitama2025-03-04 13:31
- Pull request#56MrCheesyBurgerU2025-03-03 20:12
- Pull request#55MrCheesyBurgerU2025-03-03 18:19
- Pull request#54jduitama2025-02-27 14:32
- Releasejduitama2025-02-24 17:59Version 5.0.1
- Issue comment#53jduitama2025-02-24 17:54Out of memory
- Pull request#54Rapsssito2025-02-07 09:29
- Issue#52Rem1burwell2025-01-15 20:15Demultiplex with txt file with two columns
- Issue#53diriano2024-11-02 13:33Out of memory
- Issue comment#52Rem1burwell2024-10-18 18:46Demultiplex with txt file with two columns
- Issue#52Rem1burwell2024-10-18 18:46Demultiplex with txt file with two columns
- Pull request#51jduitama2024-03-22 20:19
- Pull request#51vparrac2024-03-13 22:06
- Releasejduitama2024-01-25 16:05Version 5.0.0 of NGSEP.
- Issue comment#45jduitama2024-01-04 22:18Code to reproduce Gil 2021 Rice tilling results
- Issue comment#45seb-mueller2023-12-19 08:03Code to reproduce Gil 2021 Rice tilling results
- Issue comment#45jduitama2023-12-18 21:06Code to reproduce Gil 2021 Rice tilling results
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 25 stars here means stars gained during the window, not the repo's star count.