Collection of useful scripts, largely for sequence analysis
active 2023-10-08 → 2026-02-19 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 866 days from 2023-10-08 to 2026-02-19. Pushes: 81 total, peak 8 in a day. Pull requests: 6 total, peak 2 in a day. Issues: 16 total, peak 3 in a day. Comments: 6 total, peak 2 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| RoganGrant | 73 | 66 | 0 | 4 |
| luisa-cusick | 27 | 7 | 6 | 2 |
| m-schleck | 5 | 5 | 0 | 0 |
| mxposed | 2 | 2 | 0 | 0 |
| vauyeung | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#23RoganGrant2025-05-22 00:12append=FALSE does not remove prior FOVs
- Issue#23RoganGrant2025-05-22 00:12append=FALSE does not remove prior FOVs
- Issue comment#23RoganGrant2025-05-21 21:46append=FALSE does not remove prior FOVs
- Issue#23vauyeung2025-05-21 21:21append=FALSE does not remove prior FOVs
- Issue#21luisa-cusick2025-04-28 16:11Gene expression snakemake pipeline fails when there are antibody libraries in the pool
- Pull request#22luisa-cusick2025-02-12 15:51
- Issue#21luisa-cusick2025-02-12 15:37Gene expression snakemake pipeline fails when there are antibody libraries in the pool
- Issue#15luisa-cusick2025-02-12 15:31Update Snakemake pipeline to build CB object
- Issue#20luisa-cusick2025-01-06 16:01Track Baysor pre-processing script
- Issue#20luisa-cusick2025-01-06 16:00Track Baysor pre-processing script
- Issue#18luisa-cusick2025-01-03 16:0110X baysor post-processing scripts fails on missing cell IDs
- Pull request#19luisa-cusick2025-01-03 15:55
- Pull request#19luisa-cusick2025-01-03 15:55
- Issue#18luisa-cusick2025-01-03 15:5210X baysor post-processing scripts fails on missing cell IDs
- Issue#16luisa-cusick2025-01-03 15:46Import missing from generalized_k_means_figure.R
- Pull request#17luisa-cusick2024-12-20 19:05
- Pull request#17luisa-cusick2024-12-20 19:04
- Issue#16luisa-cusick2024-12-18 21:25Import missing from generalized_k_means_figure.R
- Issue comment#13RoganGrant2024-11-25 05:08pretty_MA_plot doesn't label genes if convert_ids=FALSE
- Issue#13RoganGrant2024-11-25 05:06pretty_MA_plot doesn't label genes if convert_ids=FALSE
- Issue comment#15luisa-cusick2024-11-14 22:12Update Snakemake pipeline to build CB object
- Issue#15luisa-cusick2024-11-14 18:01Update Snakemake pipeline to build CB object
- Issue#13luisa-cusick2024-11-14 17:53pretty_MA_plot doesn't label genes if convert_ids=FALSE
- Pull request#14luisa-cusick2024-11-01 14:53
- Issue comment#13luisa-cusick2024-10-30 18:48pretty_MA_plot doesn't label genes if convert_ids=FALSE
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.