A cross-platform proteomics data analysis suite
active 2023-08-15 → 2026-08-02 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1084 days from 2023-08-15 to 2026-08-02. Pushes: 1,123 total, peak 19 in a day. Pull requests: 79 total, peak 5 in a day. Issues: 2,265 total, peak 22 in a day. Comments: 5,073 total, peak 41 in a day. Stars: 121 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| fcyu | 4.1K | 949 | 26 | 2.1K |
| dpolasky | 307 | 122 | 2 | 158 |
| anesvi | 220 | 9 | 0 | 206 |
| guoci | 161 | 30 | 27 | 98 |
| yangkl96 | 141 | 1 | 7 | 110 |
| KaiLiCn | 79 | 0 | 0 | 79 |
| danielgeiszler | 72 | 10 | 0 | 54 |
| rolivella | 67 | 0 | 5 | 37 |
| RobAlbn | 64 | 0 | 0 | 36 |
| apsteinberg | 52 | 0 | 0 | 42 |
| liangxiao023 | 51 | 0 | 0 | 27 |
| jwframe28 | 45 | 0 | 0 | 37 |
| BenSamy2020 | 43 | 0 | 0 | 26 |
| Amelia811 | 34 | 0 | 0 | 24 |
| amingson | 31 | 0 | 0 | 21 |
| azying312 | 30 | 0 | 0 | 21 |
| Shinya-Watanabe | 29 | 0 | 0 | 23 |
| punching-samuel | 29 | 0 | 0 | 24 |
| hcahaya | 29 | 0 | 0 | 15 |
| Dmorgen | 27 | 0 | 0 | 20 |
Recent activity
Latest issues, pull requests and releases
- Issue#2835fcyu2026-07-18 00:52N-terminal pyro-Glu on Gln (UNIMOD:28) serialized with malformed ProForma token `[UNIMOD:^[28]`, breaking Koina prediction
- Issue#2816XiheNiu2026-06-17 03:17Compensation voltage from FAIMS Orbitrap Exploris 480 RAW files
- Issue#2800fcyu2026-06-06 18:52Question about TMT integrator and different multi-plex setups
- Issue#2798amina5112026-05-27 12:49combined_site.tsv files explanation
- Issue comment#2790fcyu2026-05-17 02:13.mzid
- Issue#2781fcyu2026-05-15 11:27Best approach for open searching chemoproteomics peptide-based probes
- Issue#2789fcyu2026-05-15 11:22How to use Fragpipe's MBR function to search TMT data
- Issue comment#2787guoci2026-05-13 17:43Issue with DIA workflow for Thermo Astral data
- Issue comment#2749AUldry2026-05-13 08:50definition of log2(H/L) in the silac search result file
- Issue comment#2782Keren6262026-05-10 18:13PeptideProphet: Mixture model quality test failed
- Issue comment#2783fcyu2026-05-10 18:12top n ions algorithm
- Issue comment#2782Keren6262026-05-10 18:09PeptideProphet: Mixture model quality test failed
- Issue#2782fcyu2026-05-10 17:57PeptideProphet: Mixture model quality test failed
- Issue#2781fcyu2026-05-09 00:07Best approach for open searching chemoproteomics peptide-based probes
- Issue comment#2778fcyu2026-05-08 02:46Uncertain what this error might be
- Issue comment#2776fcyu2026-05-07 02:22SequenceWindow column in peptide-level reports -- behavior question / possible bug
- Issue#2768fcyu2026-05-02 10:49WWA data: differences between joint and separate file processing
- Issue comment#2757babsillo2026-04-30 04:26cluster vs. local --> spectral library generation problem
- Issue comment#2761fcyu2026-04-26 12:21DIA_Speclib_Quant crashes when computer's regional setting doesn't match the English use of comma and period in math
- Issue comment#2364NishikaGolani2026-04-25 10:16Headless FragPipe run under Apptainer fails DIANN version validation & Spectral Library Generation
- Issue#2760fcyu2026-04-24 11:28Build Library incl. PTMs from GPF data
- Issue comment#2758dh23052026-04-23 15:20Cys H/L Workflow DDA & DIA
- Issue comment#2753dpolasky2026-04-21 18:46Quantification of glycopeptidoforms using Glyco-N-DIA
- Issue comment#2750tryhard1242026-04-21 18:44Loading default config giving issues
- Issue comment#2749HYCCHENG2026-04-18 06:15definition of log2(H/L) in the silac search result file
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 121 stars here means stars gained during the window, not the repo's star count.