Fast and accurately polish the genome generated by long reads.
active 2023-08-16 → 2025-12-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 842 days from 2023-08-16 to 2025-12-04. Pushes: 1 total, peak 1 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 40 total, peak 3 in a day. Comments: 57 total, peak 5 in a day. Stars: 73 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| moold | 37 | 1 | 0 | 26 |
| xujialupaoli | 5 | 0 | 0 | 4 |
| jiuyaojiaonini | 4 | 0 | 0 | 2 |
| steinbrl | 3 | 0 | 0 | 1 |
| DayTimeMouse | 3 | 0 | 0 | 1 |
| GingerLeo | 3 | 0 | 0 | 1 |
| Peterhhb | 3 | 0 | 0 | 2 |
| YDD99 | 3 | 0 | 0 | 2 |
| Johnsonzcode | 2 | 0 | 0 | 2 |
| YouxinZhao | 2 | 0 | 0 | 0 |
| SoSongzhi | 2 | 0 | 0 | 1 |
| lijia666-cpu | 2 | 0 | 0 | 2 |
| VendelboNM | 2 | 0 | 0 | 0 |
| RenscoHogers | 2 | 0 | 0 | 0 |
| jackchen129 | 2 | 0 | 0 | 2 |
| splaisan | 2 | 0 | 0 | 1 |
| mmudado | 2 | 0 | 0 | 1 |
| shelkmike | 2 | 0 | 0 | 0 |
| kishor2019 | 1 | 0 | 0 | 0 |
| lwstrickland | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#145mmudado2025-11-05 11:46error while running test_data: NameError: name 'CFG' is not defined
- Issue#145mmudado2025-11-04 16:43error while running test_data: NameError: name 'CFG' is not defined
- Issue comment#118nponts2025-08-10 08:42Installation failure with multiple definition of 'rle_auxtab'
- Issue comment#144Peterhhb2025-08-08 02:52samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue comment#144moold2025-08-08 02:17samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue comment#144moold2025-08-08 02:06samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue#144moold2025-08-08 02:06samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue comment#144Peterhhb2025-08-08 01:40samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue comment#144moold2025-08-08 00:48samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue#144moold2025-08-08 00:48samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue#144Peterhhb2025-08-07 06:56samtools sort: failed to create "lgs.part001.sort.bam": Stale file handle
- Issue#143GingerLeo2025-04-13 09:10The program freezes
- Issue comment#143GingerLeo2025-04-13 09:10The program freezes
- Issue comment#141moold2025-04-11 01:40Will polishing alter the phased genome information? Do you have any suggestions?
- Issue#141moold2025-04-11 01:40Will polishing alter the phased genome information? Do you have any suggestions?
- Issue comment#143moold2025-04-11 01:38The program freezes
- Issue#143GingerLeo2025-04-09 11:18The program freezes
- Issue comment#10tudouzi11112025-03-25 10:45job halted while runing 05.polish.ref.sh
- Issue comment#142moold2025-01-09 01:10nextPolish claims to be nextDenovo
- Issue#142moold2025-01-09 01:10nextPolish claims to be nextDenovo
- Issue#142EricDeveaud2025-01-08 11:14nextPolish claims to be nextDenovo
- Issue#141YouxinZhao2024-11-27 07:09Will polishing alter the phased genome information? Do you have any suggestions?
- Issue#140moold2024-10-23 04:54Is there any option for unpolished Ns stay as Ns?
- Issue comment#140moold2024-10-23 04:54Is there any option for unpolished Ns stay as Ns?
- Issue#140hyunjokoo2024-10-23 03:57Is there any option for unpolished Ns stay as Ns?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 73 stars here means stars gained during the window, not the repo's star count.