HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.
active 2024-12-12 → 2026-06-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 564 days from 2024-12-12 to 2026-06-28. Pushes: 84 total, peak 12 in a day. Pull requests: 6 total, peak 2 in a day. Issues: 9 total, peak 2 in a day. Comments: 21 total, peak 4 in a day. Stars: 20 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| wang3702 | 93 | 76 | 3 | 10 |
| Jpickard1 | 8 | 0 | 1 | 6 |
| xumeng-zhang | 5 | 3 | 2 | 0 |
| gmurtaza404 | 5 | 0 | 0 | 2 |
| sqhang | 4 | 4 | 0 | 0 |
| muyuyang | 3 | 0 | 0 | 1 |
| sync1729 | 2 | 0 | 0 | 1 |
| CooperStansbury | 2 | 0 | 0 | 1 |
| Zhang038 | 1 | 1 | 0 | 0 |
| ydduanran | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#11gmurtaza4042025-09-14 01:20Defaults are not properly set in inference.py
- Pull request#10xumeng-zhang2025-08-23 00:08
- Pull request#9wang37022025-07-09 03:34
- Releasewang37022025-07-01 06:23HiCFoundation v1.0
- Releasewang37022025-06-09 20:24HiCFoundation v0.9
- Pull request#8wang37022025-06-07 04:29
- Pull request#8xumeng-zhang2025-06-07 04:27
- Issue#7CooperStansbury2025-06-06 18:26Clarification on Epigenomic Signal Processing and File Formats
- Issue comment#7CooperStansbury2025-06-06 12:12Clarification on Epigenomic Signal Processing and File Formats
- Issue comment#7wang37022025-06-06 04:22Clarification on Epigenomic Signal Processing and File Formats
- Issue#6wang37022025-05-10 02:17From U of Michigan
- Issue comment#6sync17292025-05-09 12:10From U of Michigan
- Issue comment#6wang37022025-05-09 05:43From U of Michigan
- Issue#6sync17292025-05-09 03:36From U of Michigan
- Issue comment#5wang37022025-05-05 17:36Chromosome 19 Reconstruction Help
- Issue comment#5Jpickard12025-05-01 02:32Chromosome 19 Reconstruction Help
- Releasewang37022025-04-29 22:13HiCFoundation v0.8
- Issue comment#5Jpickard12025-04-25 15:21Chromosome 19 Reconstruction Help
- Issue comment#5wang37022025-04-25 03:42Chromosome 19 Reconstruction Help
- Issue#5Jpickard12025-04-24 18:01Chromosome 19 Reconstruction Help
- Releasewang37022025-04-23 22:53HiCFoundation v0.7
- Releasewang37022025-03-26 21:53v0.6HiCFoundation v0.6
- Issue#3wang37022025-03-24 22:27Reconstructing Hi-C Embeddings
- Issue comment#3wang37022025-03-20 23:50Reconstructing Hi-C Embeddings
- Issue comment#3Jpickard12025-03-20 20:35Reconstructing Hi-C Embeddings
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.