Identify short variants and structural variants from raw sequencing data or genomic sequences
active 2023-12-18 → 2026-04-18 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 853 days from 2023-12-18 to 2026-04-18. Pushes: 20 total, peak 5 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 21 total, peak 3 in a day. Comments: 21 total, peak 3 in a day. Stars: 31 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| philcharron-cfia | 36 | 20 | 2 | 8 |
| pcrxn | 8 | 0 | 1 | 4 |
| comingkms | 7 | 0 | 0 | 3 |
| peterk87 | 4 | 0 | 0 | 0 |
| Eric-Altermann | 2 | 0 | 0 | 1 |
| splaisan | 1 | 0 | 0 | 1 |
| th-of | 1 | 0 | 0 | 1 |
| musquita | 1 | 0 | 0 | 0 |
| Mayne941 | 1 | 0 | 0 | 1 |
| emilydolivo97 | 1 | 0 | 0 | 0 |
| Juliana-Soto24 | 1 | 0 | 0 | 0 |
| arunprasanna83 | 1 | 0 | 0 | 1 |
| JuanmaMedina | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#13Mayne9412025-08-01 10:56IndexError: single positional indexer is out-of-bounds
- Issue#19Juliana-Soto242025-07-14 20:28TypeError: cannot pickle 'TextIOWrapper' instances
- Issue comment#18comingkms2025-06-11 18:04OSError: Cannot load library ... bin/preprocess/realign/realigner and missing variant
- Issue comment#14comingkms2025-03-13 13:03Exception: tbx_index_build failed
- Issue#14comingkms2025-03-13 13:01Exception: tbx_index_build failed
- Issue comment#14pcrxn2025-03-13 12:52Exception: tbx_index_build failed
- Issue#14comingkms2025-03-12 19:29Exception: tbx_index_build failed
- Issue comment#14pcrxn2025-03-12 19:24Exception: tbx_index_build failed
- Issue comment#14comingkms2025-03-12 19:10Exception: tbx_index_build failed
- Pull request#15pcrxn2025-03-12 18:15
- Issue comment#13pcrxn2025-03-10 17:38IndexError: single positional indexer is out-of-bounds
- Issue#13pcrxn2025-03-10 17:29IndexError: single positional indexer is out-of-bounds
- Issue comment#7JuanmaMedina2025-01-28 08:51Conda/Mamba install fails due to tensorflow 2.2.0 conflict
- Issue comment#11th-of2024-12-04 10:57Clair3 fails to parse region
- Issue comment#11arunprasanna832024-09-24 08:52Clair3 fails to parse region
- Issue#1comingkms2024-05-27 15:38Bioconda package
- Issue#12musquita2024-05-27 15:30Unable to combine_variants --snp_vcf [UnicodeDecodeError]
- Issue comment#11Eric-Altermann2024-05-20 03:53Clair3 fails to parse region
- Issue#11Eric-Altermann2024-04-30 20:53Clair3 fails to parse region
- Issue#10philcharron-cfia2024-04-29 13:21VariantDetective application
- Issue comment#10philcharron-cfia2024-04-11 12:50VariantDetective application
- Issue#10emilydolivo972024-04-11 10:06VairantDetective application
- Releasephilcharron-cfia2024-03-27 15:33VariantDetective v1.0.1
- Issue comment#9philcharron-cfia2024-03-27 15:26Implement a check for an output directory that already exists with results
- Issue#9philcharron-cfia2024-03-27 15:26Implement a check for an output directory that already exists with results
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 31 stars here means stars gained during the window, not the repo's star count.