Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
active 2023-10-03 → 2025-12-19 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 809 days from 2023-10-03 to 2025-12-19. Pushes: 15 total, peak 6 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 34 total, peak 5 in a day. Comments: 57 total, peak 9 in a day. Stars: 91 total, peak 6 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| wehos | 52 | 15 | 0 | 29 |
| MohammedZidane | 11 | 0 | 0 | 5 |
| jayypaul | 8 | 0 | 0 | 7 |
| HelloWorldLTY | 5 | 0 | 0 | 2 |
| WhenMelancholy | 4 | 0 | 0 | 2 |
| zhan8855 | 3 | 0 | 0 | 2 |
| WhirlFirst | 3 | 0 | 0 | 1 |
| noob000007 | 3 | 0 | 0 | 1 |
| amikki | 2 | 0 | 0 | 1 |
| lazappi | 2 | 0 | 0 | 1 |
| kocemir | 2 | 0 | 0 | 1 |
| lishensuo | 2 | 0 | 0 | 0 |
| lemousehunter | 2 | 0 | 0 | 1 |
| litxiaoyao | 2 | 0 | 0 | 1 |
| ngvananh2508 | 2 | 0 | 0 | 1 |
| nva001 | 1 | 0 | 0 | 0 |
| beeevita | 1 | 0 | 0 | 1 |
| Hosseini7798 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#23Hosseini77982025-07-29 05:45positional encodings
- Issue comment#14kocemir2025-02-22 12:12issue regarding metrics
- Issue comment#23wehos2025-02-07 16:39positional encodings
- Issue comment#23amikki2025-02-07 13:32positional encodings
- Issue comment#22wehos2025-01-27 14:13Input data format
- Issue#22wehos2025-01-27 14:13Input data format
- Issue#23amikki2025-01-25 12:54positional encodings
- Issue comment#22lazappi2025-01-24 07:22Input data format
- Issue comment#17wehos2025-01-23 11:05how to convert these numbers into the real cell type ?
- Issue#17wehos2025-01-23 11:05how to convert these numbers into the real cell type ?
- Issue comment#20wehos2025-01-23 11:00Question about the latent layer used in pretrain model
- Issue comment#13wehos2025-01-23 10:57self.head = annotation in cell type annotation task but None in the imputation task
- Issue#13wehos2025-01-23 10:57self.head = annotation in cell type annotation task but None in the imputation task
- Issue comment#14wehos2025-01-23 10:55issue regarding metrics
- Issue comment#12wehos2025-01-23 10:51Meet an error when using CellPLM
- Issue comment#18wehos2025-01-23 10:49Request for pretraining dataset links
- Issue#18wehos2025-01-23 10:49Request for pretraining dataset links
- Issue comment#19wehos2025-01-23 10:45Question about the position encoding of 'pe = 0.' code
- Issue comment#21wehos2025-01-23 10:39Errors in generating cell embeddings
- Issue comment#22wehos2025-01-23 10:37Input data format
- Issue#4wehos2025-01-23 10:33Request for Update on Gene Perturbation Prediction Task Workflow
- Issue#3wehos2025-01-23 10:32ensembl conversion
- Issue#22lazappi2025-01-13 08:37Input data format
- Issue#21HelloWorldLTY2024-12-01 14:03Errors in generating cell embeddings
- Issue#20lishensuo2024-11-16 02:45Question about the latent layer used in pretrain model
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 91 stars here means stars gained during the window, not the repo's star count.