Notebooks demonstrating how to do simple tasks related to free energy calculations.
active 2024-01-01 → 2026-07-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 919 days from 2024-01-01 to 2026-07-07. Pushes: 167 total, peak 18 in a day. Pull requests: 58 total, peak 5 in a day. Issues: 46 total, peak 5 in a day. Comments: 172 total, peak 11 in a day. Stars: 20 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| atravitz | 200 | 104 | 30 | 32 |
| IAlibay | 111 | 16 | 11 | 40 |
| hannahbaumann | 69 | 22 | 5 | 17 |
| mikemhenry | 46 | 17 | 8 | 14 |
| jthorton | 33 | 8 | 1 | 12 |
| github-actions[bot] | 29 | 0 | 0 | 29 |
| review-notebook-app[bot] | 20 | 0 | 0 | 20 |
| RiesBen | 7 | 0 | 0 | 2 |
| mathilfiker | 3 | 0 | 0 | 3 |
| pre-commit-ci[bot] | 3 | 0 | 3 | 0 |
| caoyx061 | 2 | 0 | 0 | 1 |
| jameseastwood | 2 | 0 | 0 | 0 |
| dwhswenson | 1 | 0 | 0 | 1 |
| ijpulidos | 1 | 0 | 0 | 1 |
| satoshikanaoka | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#226hannahbaumann2026-06-10 09:33Add simulation extraction and viewing notebook
- Pull request#310hannahbaumann2026-06-08 15:09
- Pull request#308atravitz2026-04-29 23:45
- Pull request#301atravitz2026-03-27 18:24
- Pull request#293atravitz2026-02-27 22:09
- Issue comment#291review-notebook-app[bot]2026-02-06 21:12remove alchemical network cookbook
- Pull request#291atravitz2026-02-06 21:12
- Issue#290atravitz2026-02-06 21:01update Create an Alchemical Network notebook to not use to_rbfe_alchemical_network
- Issue#288atravitz2026-02-06 15:19turn off md sim running in example notebook
- Issue#287hannahbaumann2026-02-06 13:59Tutorial for HybTop RBFE simulations with protein-membrane systems
- Issue comment#285IAlibay2026-01-28 11:20ABFE tutorial notebook fails with error that says, "Particle position is NaN" or "Energy is NaN"?
- Pull request#284atravitz2026-01-26 17:38
- Issue comment#284review-notebook-app[bot]2026-01-16 21:29add cofactor example as a cookbook
- Pull request#284atravitz2026-01-16 21:29
- Pull request#283atravitz2026-01-10 00:11
- Pull request#274atravitz2026-01-09 22:25
- Issue comment#274atravitz2026-01-09 21:58update ligandnetwork generation notebooks
- Pull request#282pre-commit-ci[bot]2026-01-06 20:17
- Issue comment#280github-actions[bot]2025-12-11 01:21update advanced topics & customization notebook
- Issue comment#280review-notebook-app[bot]2025-12-11 01:21update advanced topics & customization notebook
- Issue comment#279atravitz2025-12-11 00:57do we still want a colab link on PRs now what we have ReviewNB?
- Pull request#275atravitz2025-12-10 23:35
- Issue comment#275review-notebook-app[bot]2025-12-10 22:04consolidate instructions for building networks from orion or fep+ files
- Pull request#275atravitz2025-12-10 22:04
- Pull request#272atravitz2025-12-10 18:47
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.