Metagenomics and Metatranscriptomics pipeline
active 2023-08-16 → 2025-09-12 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 759 days from 2023-08-16 to 2025-09-12. Pushes: 101 total, peak 9 in a day. Pull requests: 37 total, peak 3 in a day. Issues: 22 total, peak 4 in a day. Comments: 35 total, peak 11 in a day. Stars: 6 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| rroutsong | 162 | 82 | 31 | 18 |
| skchronicles | 64 | 12 | 6 | 16 |
| github-actions[bot] | 6 | 6 | 0 | 0 |
| eameyer | 2 | 0 | 0 | 0 |
| GaryZhangYue | 2 | 1 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#40rroutsong2025-09-10 17:12create an option to run the main job on a norm node
- Issue#35rroutsong2025-09-10 17:12Add option to pipeline to explicitly set/select the assembler
- Issue comment#40GaryZhangYue2025-08-22 15:02create an option to run the main job on a norm node
- Issue#29rroutsong2025-08-21 19:05dRep rule parameterization
- Pull request#38rroutsong2025-08-18 16:02
- Pull request#37rroutsong2025-08-14 15:57
- Pull request#36skchronicles2025-08-13 21:19
- Pull request#36rroutsong2025-08-13 19:45
- Issue comment#12skchronicles2025-08-13 16:46Allow for mouse host in host read removal
- Pull request#33rroutsong2025-06-04 17:55
- Issue comment#32rroutsong2025-05-30 20:54docs: update run documentation, esp --triggers
- Pull request#33rroutsong2025-05-30 20:49
- Issue comment#31rroutsong2025-05-16 16:48Samplesheet docs
- Pull request#30rroutsong2024-10-25 19:25
- Pull request#30rroutsong2024-08-22 17:40
- Issue#29rroutsong2024-08-19 15:37dRep rule parameterization
- Issue#13rroutsong2024-08-19 15:28Remove references to the --coa option from run sub command help message
- Issue#19rroutsong2024-08-19 15:28Specify snakemake re-run triggers
- Pull request#28rroutsong2024-08-13 20:20
- Pull request#28rroutsong2024-08-13 20:10
- Pull request#27rroutsong2024-08-12 17:12
- Issue comment#27rroutsong2024-08-09 16:44feat: add flag to set snakemake rerun triggers
- Pull request#27rroutsong2024-08-09 15:04
- Issue#21rroutsong2024-08-07 16:36CAT (contig anotation tool) not classifying correctly
- Issue comment#21rroutsong2024-08-07 16:36CAT (contig anotation tool) not classifying correctly
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.