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PNNL-CompBio/candleDataProcessing

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Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.

active 2023-10-052023-11-21 (UTC)

Partial coverage19,426 / 25,029 hourly files (78%) · 2 absent upstream · 5,601 failed, retryable2023-10-042026-08-12 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
78
Pushes
17
Pull requests
8
Issues
13
Stars
2
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 48 days from 2023-10-05 to 2023-11-21. Pushes: 17 total, peak 5 in a day. Pull requests: 8 total, peak 2 in a day. Issues: 13 total, peak 4 in a day. Comments: 31 total, peak 5 in a day. Stars: 2 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
sgosline399515
jjacobson95288316
BelindaBGarana2000

Recent activity

Latest issues, pull requests and releases

  • Pull request#51jjacobson952023-11-21 21:31
  • Issue comment#45jjacobson952023-11-21 18:54
    Created versioned script/docker that builds entire dataset in root of build directory
  • Issue comment#45sgosline2023-11-21 18:29
    Created versioned script/docker that builds entire dataset in root of build directory
  • Issue comment#45jjacobson952023-11-21 18:26
    Created versioned script/docker that builds entire dataset in root of build directory
  • Issue#50jjacobson952023-11-21 00:26
    Figure out secure way to pull Synapse data during build without revealing token
  • Issue comment#47sgosline2023-11-14 18:34
    Add drug perturbation data from CMAP
  • Issue comment#41jjacobson952023-11-14 00:30
    Come up with package/dataset name
  • Issue comment#44sgosline2023-11-14 00:14
    Updating BeatAML to retrieve the full datset.
  • Issue comment#41sgosline2023-11-14 00:13
    Come up with package/dataset name
  • Issue comment#47sgosline2023-11-14 00:11
    Add drug perturbation data from CMAP
  • Issue#48sgosline2023-11-14 00:09
    Add in PDX omics data and microtissue dose response
  • Issue#47BelindaBGarana2023-11-13 23:54
    Add drug perturbation data
  • Issue#46BelindaBGarana2023-11-13 23:52
    Add metabolomics and drug perturbation data
  • Issue comment#41jjacobson952023-11-13 23:23
    Come up with package/dataset name
  • Issue comment#44jjacobson952023-11-12 22:03
    Updating BeatAML to retrieve the full datset.
  • Pull request#44jjacobson952023-11-08 21:28
  • Issue comment#41jjacobson952023-11-02 23:02
    Come up with package/dataset name
  • Issue#40sgosline2023-11-02 22:48
    Restructure repository to prepare for python package
  • Pull request#42sgosline2023-11-02 22:48
  • Issue comment#41sgosline2023-11-02 22:48
    Come up with package/dataset name
  • Issue comment#35sgosline2023-10-31 21:21
    Update figshare pull to deal with authentication
  • Issue#35sgosline2023-10-31 21:21
    Update figshare pull to deal with authentication
  • Issue comment#39sgosline2023-10-31 20:47
    Add in additional omics data from beatAML cancer cell paper
  • Issue#43sgosline2023-10-31 20:46
    Can't seem to find correct files names in HCMI script
  • Issue comment#43sgosline2023-10-20 22:27
    Can't seem to find correct files names in HCMI script

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.