mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
active 2023-09-04 → 2025-11-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 805 days from 2023-09-04 to 2025-11-16. Pushes: 60 total, peak 17 in a day. Pull requests: 15 total, peak 4 in a day. Issues: 8 total, peak 2 in a day. Comments: 9 total, peak 4 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| tmaklin | 87 | 60 | 15 | 6 |
| jnalanko | 3 | 0 | 0 | 2 |
| EnriqueDoster | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Releasetmaklin2024-10-16 08:23mSWEEP-v2.2.1 (16 October 2024)
- Issue comment#37tmaklin2024-10-16 08:19--read-likelihood crashes
- Issue#37tmaklin2024-10-16 08:19--read-likelihood crashes
- Pull request#38tmaklin2024-10-16 08:17
- Issue comment#38tmaklin2024-10-16 08:17Initialize pointers (fixes issue #37)
- Issue comment#37jnalanko2024-10-16 07:43--read-likelihood crashes
- Issue comment#37tmaklin2024-10-16 05:35--read-likelihood crashes
- Issue#37jnalanko2024-10-15 14:35--read-likelihood crashes
- Releasetmaklin2024-09-11 12:27v2.2.0
- Issue#36tmaklin2024-09-11 12:26[CI] Automatically publishing new release is broken
- Pull request#35tmaklin2024-09-11 12:10
- Pull request#35tmaklin2024-09-11 12:10
- Pull request#34tmaklin2024-09-11 11:51
- Pull request#34tmaklin2024-09-11 11:50
- Pull request#32tmaklin2024-08-20 15:29
- Pull request#32tmaklin2024-08-20 15:29
- Pull request#31tmaklin2024-08-20 13:31
- Pull request#30tmaklin2024-08-15 10:09
- Pull request#30tmaklin2024-08-15 10:09
- Issue comment#29EnriqueDoster2024-08-04 19:01Optimizing mSWEEP runs on large datasets
- Issue#29EnriqueDoster2024-08-04 19:01Optimizing mSWEEP runs on large datasets
- Issue comment#29tmaklin2024-07-31 07:29Optimizing mSWEEP runs on large datasets
- Issue#24tmaklin2024-05-30 08:34Reading plaintext alignments consumes a lot of memory (workaround inside)
- Pull request#28tmaklin2024-05-30 08:33
- Pull request#28tmaklin2024-05-30 08:31
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.