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An open-source re-implementation of the RDP4 recombination detection program

active 2023-08-302025-11-05 (UTC)

Partial coverage20,532 / 26,288 hourly files (78%) · 2 absent upstream · 5,753 failed, retryable2023-08-152026-08-14 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
140
Pushes
26
Pull requests
10
Issues
28
Stars
9
Forks
2

Activity over time

Daily event counts in the loaded window

Line chart, 799 days from 2023-08-30 to 2025-11-05. Pushes: 26 total, peak 3 in a day. Pull requests: 10 total, peak 2 in a day. Issues: 28 total, peak 6 in a day. Comments: 59 total, peak 8 in a day. Stars: 9 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
ArtPoon325318
WilliamZekaiWang3212311
GopiGugan215210
terrycojones12026
guoqiangu9005
SandeepThokala7402
pmagbor3001
darrenpmartin3003
Wesady2001
AbhishakeL2000
wdenggithub1001
PaulaPrietoOliveira1001

Recent activity

Latest issues, pull requests and releases

  • Issue comment#110WilliamZekaiWang2025-08-05 02:52
    Siscan's logic and sliding window may be incorrect
  • Issue#110WilliamZekaiWang2025-08-05 02:52
    Siscan's logic and sliding window may be incorrect
  • Issue#78WilliamZekaiWang2025-08-05 02:52
    Divide by zero encountered in unit tests
  • Issue comment#99WilliamZekaiWang2025-08-05 02:52
    Breakpoints are indexed past the total length of input sequences
  • Issue#99WilliamZekaiWang2025-08-05 02:52
    Breakpoints are indexed past the total length of input sequences
  • Issue#113WilliamZekaiWang2025-08-05 00:52
    UPGMA clustering
  • Issue comment#104WilliamZekaiWang2024-08-12 00:00
    Be careful about importing mpi4py and give the user a way to not use MPI
  • Pull request#104WilliamZekaiWang2024-08-12 00:00
  • Issue comment#112GopiGugan2024-08-07 23:22
    Error message in the standard error
  • Issue comment#112PaulaPrietoOliveira2024-08-07 20:56
    Error message in the standard error
  • Issue comment#111GopiGugan2024-08-06 03:24
    Installation error due to h5py
  • Issue#111GopiGugan2024-08-06 03:24
    Installation error due to h5py
  • Issue comment#108GopiGugan2024-08-06 01:21
    Tools selection
  • Issue#110WilliamZekaiWang2024-08-02 19:02
    Siscan's logic and sliding window may be incorrect
  • Pull request#109WilliamZekaiWang2024-07-30 20:17
  • Issue comment#107ArtPoon2024-07-28 19:06
    Run flake8 (and black) on the code?
  • Issue comment#102ArtPoon2024-07-28 19:04
    mpi4py is supposedly optional but openrdp fails if it is not installed
  • Issue comment#103ArtPoon2024-07-28 19:03
    MPI fatal error
  • Issue comment#106ArtPoon2024-07-28 19:02
    Make ScanResults into a UserDict
  • Issue comment#104ArtPoon2024-07-28 19:00
    Be careful about importing mpi4py and give the user a way to not use MPI
  • Issue comment#69ArtPoon2024-07-28 18:58
    Excessive text being printed to console
  • Issue comment#69terrycojones2024-07-27 21:41
    Excessive text being printed to console
  • Issue#107terrycojones2024-07-27 21:37
    Run flake8 (and black) on the code?
  • Issue comment#105terrycojones2024-07-27 21:32
    UnboundLocalError: local variable 'bootset' referenced before assignment ```
  • Pull request#106terrycojones2024-07-27 21:23

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.