Do surface-exposed virus proteins have higher dN/dS?
active 2025-12-03 → 2026-06-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 206 days from 2025-12-03 to 2026-06-26. Pushes: 10 total, peak 3 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 16 total, peak 9 in a day. Comments: 13 total, peak 2 in a day. Stars: 0 total, peak 0 in a day.
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- Issues
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- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ArtPoon | 31 | 8 | 0 | 7 |
| hugocastelan | 5 | 1 | 0 | 4 |
| horaciobam | 2 | 1 | 0 | 1 |
| pmagbor | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#148pmagbor2026-05-06 06:17Identifying outlier sequences
- Issue comment#153hugocastelan2026-04-27 22:47Update results for L50 and L100
- Issue comment#128horaciobam2026-04-18 17:14Issue about Figure S1
- Issue comment#146ArtPoon2026-04-16 20:24Phylogenetic correlations among viruses
- Issue#137ArtPoon2026-04-16 00:49Authors did not use a formal hypothesis testing framework instead of fitting a ML model
- Issue#131ArtPoon2026-04-16 00:49Confounding in binomial regression (gene-wide dN/dS)
- Issue#129ArtPoon2026-04-16 00:49Phylogenetic confounding and data leakage
- Issue#130ArtPoon2026-04-16 00:48Wasserstein distance norm
- Issue#126ArtPoon2026-04-16 00:48Distributional tests on fingerprints
- Issue comment#146hugocastelan2026-04-14 23:06Phylogenetic correlations among viruses
- Issue comment#131ArtPoon2026-03-31 22:50Confounding in binomial regression (gene-wide dN/dS)
- Issue comment#129hugocastelan2026-03-31 00:04Phylogenetic confounding and data leakage
- Issue comment#146ArtPoon2026-03-26 02:57Phylogenetic correlations among viruses
- Issue comment#126ArtPoon2026-03-20 20:44Distributional tests on fingerprints
- Issue comment#146hugocastelan2026-03-20 19:20Phylogenetic correlations among viruses
- Issue comment#135ArtPoon2026-03-19 14:52Disagreement about subsampling
- Issue#140ArtPoon2026-03-11 20:04Why not exclude plant viruses
- Issue#142ArtPoon2026-03-11 16:44Outliers are canyon capsids
- Issue#138ArtPoon2026-03-11 16:08Discussion of previous work could be described more clearly
- Issue#137ArtPoon2026-03-11 16:08Authors did not use a formal hypothesis testing framework instead of fitting a ML model
- Issue#132ArtPoon2026-03-11 16:08Canyon capsids
- Issue#133ArtPoon2026-03-11 16:08Plant viruses
- Issue#144ArtPoon2026-03-11 16:05Did the distance metric used in MDS differ from Pond 2010? It might be useful to add a note that synchronizes language/terminology between the two papers.
- Issue#136ArtPoon2026-03-11 16:02Poor performance of a machine learning classifier does not feel like strong evidence of a true non-separation between two groups.
- Issue comment#127ArtPoon2026-03-11 16:00Disagreement about how to deal with differences in alignment lengths, etc.
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.