AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU
active 2026-02-19 → 2026-05-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 75 days from 2026-02-19 to 2026-05-04. Pushes: 34 total, peak 8 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 5 total, peak 2 in a day. Comments: 16 total, peak 3 in a day. Stars: 41 total, peak 10 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| benjamin-perry-duke | 44 | 32 | 0 | 10 |
| jasonkim8652 | 4 | 2 | 0 | 1 |
| maxshen29 | 2 | 0 | 0 | 2 |
| xuewuzhang-UTSW | 1 | 0 | 0 | 1 |
| DUTchecheche | 1 | 0 | 0 | 1 |
| ShuhaoGithub | 1 | 0 | 0 | 1 |
| v-shaoningli | 1 | 0 | 0 | 0 |
| lg1243610235-cmyk | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#23lg1243610235-cmyk2026-04-24 08:42Database setup script ignores --protein-only and --rna-only parameters in default HuggingFace mode
- Issue comment#21benjamin-perry-duke2026-04-20 03:55BUG: Template Misalignment
- Issue comment#19benjamin-perry-duke2026-04-20 03:29Unresolved git merge conflict of scripts/setup_databases.sh
- Issue comment#16benjamin-perry-duke2026-04-11 17:29--temp-dir for hpc
- Issue comment#18benjamin-perry-duke2026-04-11 02:28First-batch inference significantly slower due to initialization overhead (~6x slowdown)
- Issue comment#11benjamin-perry-duke2026-04-11 01:43Question: Expected timeline for DNA/RNA MSA search and ligand interaction support?
- Issue#14jasonkim86522026-03-22 21:10Modal mounting issue
- Issue comment#14jasonkim86522026-03-19 18:11Modal mounting issue
- Issue#10benjamin-perry-duke2026-03-07 22:04Missing Taxonomy ID
- Issue comment#10benjamin-perry-duke2026-03-07 22:04Missing Taxonomy ID
- Issue#10v-shaoningli2026-03-07 13:53Missing Taxonomy ID
- Issue comment#9benjamin-perry-duke2026-03-06 03:48new docker,info erro
- Issue comment#9maxshen292026-03-06 00:56new docker,info erro
- Issue comment#6ShuhaoGithub2026-03-05 10:21database error
- Issue comment#8maxshen292026-03-05 09:25The Phase 2 step did not complete on the multi-GPU system, and I couldn't find the system output logs.
- Issue comment#7benjamin-perry-duke2026-03-03 15:42The program finished running, but structural prediction was not executed on multi-GPU server.
- Issue comment#5benjamin-perry-duke2026-03-02 14:58CUDA error: out of memory
- Issue comment#4xuewuzhang-UTSW2026-03-01 01:11database issue
- Issue#5benjamin-perry-duke2026-03-01 00:53CUDA error: out of memory
- Issue comment#3benjamin-perry-duke2026-02-26 03:00Modal image build failed
- Issue comment#3DUTchecheche2026-02-26 01:29Modal image build failed
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 41 stars here means stars gained during the window, not the repo's star count.