Code for running RFdiffusion on Vanda NUS
Python · active 2025-02-05 → 2026-07-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 526 days from 2025-02-05 to 2026-07-15. Pushes: 11 total, peak 3 in a day. Pull requests: 14 total, peak 3 in a day. Issues: 50 total, peak 3 in a day. Comments: 124 total, peak 4 in a day. Stars: 396 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| rclune | 30 | 2 | 2 | 18 |
| woodsh17 | 14 | 6 | 1 | 3 |
| davidcjuergens | 11 | 3 | 5 | 3 |
| roccomoretti | 9 | 0 | 0 | 9 |
| DazLe-Q | 9 | 0 | 0 | 7 |
| schoyeon | 7 | 0 | 0 | 3 |
| lyskov | 7 | 0 | 1 | 4 |
| WHUminghui | 5 | 0 | 0 | 3 |
| alejandromontesa-unizar | 5 | 0 | 0 | 4 |
| BYachnin | 4 | 0 | 0 | 3 |
| Nicole-DH | 4 | 0 | 0 | 4 |
| nalaterry | 4 | 0 | 0 | 4 |
| liukuozy | 3 | 0 | 0 | 3 |
| SandS73th | 3 | 0 | 0 | 2 |
| navvye | 3 | 0 | 0 | 2 |
| dhiraj82 | 2 | 0 | 0 | 2 |
| hdieckhaus | 2 | 0 | 2 | 0 |
| kimlab-cnu | 2 | 0 | 0 | 1 |
| wisdomjack | 2 | 0 | 0 | 2 |
| EitFeldIan | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#455jvdoorss2026-05-20 21:28Avoid DGL dependency
- Pull request#452rclune2026-04-24 18:47
- Issue#443rclune2026-02-24 17:49Deformation of coordinate space
- Issue comment#441rclune2026-02-16 18:06Generating diverse set of proteins
- Issue comment#359zylia0120-cloud2026-01-29 08:33The run_inference.py section hasn't been changed
- Issue#440nmbiss747-netizen2026-01-27 06:50Contradiction between RFD3 design and AF3 prediction
- Issue comment#359davidcjuergens2026-01-13 20:33The run_inference.py section hasn't been changed
- Issue#438Jameel92026-01-09 04:36The Colab notebook
- Issue comment#436Xiaowei1602025-12-19 06:18Binder design with the target is pentamer symmetric center, not monomer
- Issue#432rclune2025-12-09 23:28Error: Multiple chain IDs in chain: {'A', 'B'}
- Issue#433TimothyChen2252025-12-08 03:01Generating binders for multichain protein targets
- Issue comment#431dhiraj822025-12-07 15:25Primary config directory not found.
- Issue#432DrLeucine2025-12-06 19:34Error: Multiple chain IDs in chain: {'A', 'B'}
- Issue comment#431dhiraj822025-12-03 18:21Primary config directory not found.
- Issue comment#413dennisbrookner2025-12-02 00:01RuntimeError: mat1 and mat2 shapes cannot be multiplied (111556x92 and 103x64)
- Issue#428rclune2025-12-01 20:02AttributeError: 'ScaffoldedSampler' object has no attribute 'cyclic_reses' in RFdiffusion/examples/design_ppi_flexible_peptide_with_secondarystructure_specification.sh
- Issue comment#428rclune2025-12-01 20:02AttributeError: 'ScaffoldedSampler' object has no attribute 'cyclic_reses' in RFdiffusion/examples/design_ppi_flexible_peptide_with_secondarystructure_specification.sh
- Issue comment#284Forever83412025-12-01 07:12SVD error
- Issue comment#420kimlab-cnu2025-11-27 01:21Sequence Design in RFpeptides paper
- Issue#380rclune2025-11-25 17:33CUDA error: no kernel image is available for execution on the device (NVIDIA RTX 5090 + CUDA 11.6.2 + torch==1.12.1+cu116)
- Issue comment#389alphafp2025-11-19 03:51Question: Exploring the Optimal Range for Denoising Timesteps (Iterations) in Binder Design
- Issue#425schoyeon2025-11-18 02:09Seeking guidance on hotspot specification and unexpected results
- Issue#423schoyeon2025-11-18 02:06Seeking guidance on hotspot specification and unexpected results
- Issue comment#422tydingcw2025-11-17 23:13outdated requirements, how to install on cuda 12.x and python 3.11 or later ?
- Issue comment#420roccomoretti2025-11-04 17:57Sequence Design in RFpeptides paper
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 396 stars here means stars gained during the window, not the repo's star count.