Fast method for inferring cancer clonal population structure from SNV data.
active 2023-11-09 → 2026-03-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 867 days from 2023-11-09 to 2026-03-24. Pushes: 6 total, peak 1 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 6 total, peak 2 in a day. Comments: 9 total, peak 2 in a day. Stars: 12 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| elhurtado | 8 | 6 | 1 | 1 |
| aroth85 | 2 | 0 | 0 | 2 |
| endertial | 2 | 0 | 0 | 1 |
| AntoniaChroni | 2 | 0 | 0 | 1 |
| felixbeaudry | 2 | 0 | 0 | 1 |
| ajw2329 | 1 | 0 | 0 | 1 |
| THT-sleepy | 1 | 0 | 0 | 0 |
| Pranav-Garg | 1 | 0 | 0 | 1 |
| harrison-anth | 1 | 0 | 0 | 1 |
| sreerampeela | 1 | 0 | 0 | 0 |
| bagieutopia | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#46elhurtado2026-01-20 18:31
- Issue comment#45aroth852025-10-21 17:08Additional cluster filtering by comparison to cosmic signatures to exclude clusters with high proportion of likely artefact mutations
- Issue comment#43harrison-anth2025-09-08 00:20Is there a dataset of TCGA pyclone-vi analysis result?
- Issue comment#38Pranav-Garg2025-06-11 22:31Non-integer copy numbers
- Issue#44felixbeaudry2024-12-20 03:26var_params.z invalid value encountered in subtract
- Issue comment#44felixbeaudry2024-12-20 03:26var_params.z invalid value encountered in subtract
- Issue comment#44elhurtado2024-12-20 01:48var_params.z invalid value encountered in subtract
- Issue comment#40endertial2024-10-25 10:54explain major and minor cn for pyclone input
- Issue comment#40ajw23292024-10-24 18:06explain major and minor cn for pyclone input
- Issue#42sreerampeela2024-10-18 10:26Creating Pyclone-VI input file from ASCAT and Strelka2 tool outputs
- Issue#39endertial2024-06-27 20:30AttributeError: module 'numpy' has no attribute 'math'. Did you mean: 'emath'?
- Issue#37bagieutopia2024-05-04 12:54input data query
- Issue comment#36AntoniaChroni2023-11-10 21:42Error while running sub-command `fit`
- Issue comment#36aroth852023-11-10 21:31Error while running sub-command `fit`
- Issue#36AntoniaChroni2023-11-09 23:10Error while running sub-command `fit`
- Issue#35THT-sleepy2023-11-09 01:38How can one tell from the results whether a mutation is clonal or not?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.