Skip to content

SWC-Advanced-Microscopy/BakingTray

View on GitHub ↗Related repositories →

Serial-section automated anatomy extension for ScanImage

active 2023-10-172026-07-07 (UTC)

Complete coverage26,524 / 26,524 hourly files (100%) · 2 absent upstream2023-08-152026-08-24 (UTC)
Events
168
Pushes
83
Pull requests
0
Issues
43
Stars
10
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 995 days from 2023-10-17 to 2026-07-07. Pushes: 83 total, peak 5 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 43 total, peak 11 in a day. Comments: 27 total, peak 4 in a day. Stars: 10 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
raacampbell15183027
mkrumin2000

Recent activity

Latest issues, pull requests and releases

  • Issue comment#479raacampbell2026-07-04 23:26
    Laser GUI update methods trigger blocking serial reads on timer hot paths (port contention / display freezes)
  • Issue comment#478raacampbell2026-07-04 23:25
    Migrate other laser classes to new code base once `maitai` is complete
  • Issue#51raacampbell2026-07-04 23:25
    Laser GUI timer runs during bake
  • Issue comment#451raacampbell2026-07-04 23:24
    Laser comms fails and acquisition stops randomly (rare)
  • Issue comment#456raacampbell2026-06-12 12:26
    Sample VP_CAP65 just stopped with the laser seemingly trying to turn off half way through
  • Issue#472raacampbell2025-10-15 19:15
    Preview scans can fail with an error that seems related to a matrix size in ScanImage
  • Releaseraacampbell2025-05-14 15:06
    2025.05
  • Issue comment#467raacampbell2025-01-10 13:09
    Hitting "New Sample" should uncheck the Save flag in SI
  • Issue#467raacampbell2025-01-10 13:09
    Hitting "New Sample" should uncheck the Save flag in SI
  • Issue comment#469raacampbell2025-01-10 09:50
    PI stage throws errors if trying to exceed physical limits
  • Issue comment#470raacampbell2025-01-09 15:57
    Editing blade position and Cut Size behavior
  • Issue#469mkrumin2025-01-09 14:52
    PI stage throws errors if trying to exceed physical limits
  • Issue#468mkrumin2025-01-09 14:44
    Weird slicing behavior when close to X limits
  • Issue#467raacampbell2024-12-05 14:57
    Hitting "New Sample" should uncheck the Save flag in SI
  • Issue#466raacampbell2024-09-20 12:22
    Where are the limits on stages?
  • Issue#465raacampbell2024-09-20 12:15
    The stop button popup is not pausing the acquisition
  • Issue comment#283raacampbell2024-08-16 08:12
    Section start number modified after resume
  • Issue comment#411raacampbell2024-07-30 15:30
    Add laser wavelength to recipe. It's too annoying that it's not there.
  • Issue#463raacampbell2024-07-29 17:57
    Doing "New Sample" before lowering the stage causes only 1 section to be imaged
  • Issue#462raacampbell2024-07-29 17:55
    NV repeatedly reports laser on after it's been turned off
  • Issue comment#390raacampbell2024-07-12 17:04
    Sometimes MaiTai reports laser off when it is not. Acq then does not start
  • Issue#461raacampbell2024-07-12 15:30
    Make Stop dialog clearer: people keep initiating stitching
  • Issue#460raacampbell2024-07-12 15:20
    Resume failed because ScanImage though it was still in acquisition mode, even though it appeared to be stopped
  • Issue comment#390raacampbell2024-07-12 10:57
    Sometimes MaiTai reports laser off when it is not. Acq then does not start
  • Issue#459raacampbell2024-06-27 11:57
    Wrong channel displayed in Preview Window after autothresh

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 10 stars here means stars gained during the window, not the repo's star count.