Repository for ENACT pipeline for end-to-end analysis of Visium HD data
active 2025-04-09 → 2026-07-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 453 days from 2025-04-09 to 2026-07-05. Pushes: 1 total, peak 1 in a day. Pull requests: 4 total, peak 3 in a day. Issues: 25 total, peak 4 in a day. Comments: 29 total, peak 3 in a day. Stars: 17 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Mena-SA-Kamel | 12 | 1 | 3 | 4 |
| AlbertPlaPlanas | 11 | 0 | 0 | 7 |
| hjames1 | 6 | 0 | 0 | 3 |
| Lyeleyl | 5 | 0 | 0 | 2 |
| kmpf | 4 | 0 | 0 | 3 |
| februaryfang | 4 | 0 | 0 | 2 |
| meaksu | 3 | 0 | 0 | 2 |
| ivanmilevtues | 2 | 0 | 1 | 1 |
| gitMakeCoffee | 2 | 0 | 0 | 0 |
| huang-sh | 1 | 0 | 0 | 0 |
| danjah21 | 1 | 0 | 0 | 0 |
| KunHHE | 1 | 0 | 0 | 0 |
| kvn95ss | 1 | 0 | 0 | 1 |
| lindsdudley | 1 | 0 | 0 | 1 |
| jade-minzlaff | 1 | 0 | 0 | 1 |
| AtlasMaroc | 1 | 0 | 0 | 1 |
| avpatel18 | 1 | 0 | 0 | 0 |
| sudarshan227 | 1 | 0 | 0 | 0 |
| Rodolfo-Cabrera | 1 | 0 | 0 | 0 |
| Sophielsn | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#11AtlasMaroc2026-01-16 13:40Image processing with stardist
- Issue#63AlbertPlaPlanas2025-12-10 14:00Incompatible Key Frame
- Issue#64AlbertPlaPlanas2025-12-10 13:51Use cell type annotated scRNA-seq as input for annotation?
- Issue comment#66AlbertPlaPlanas2025-12-09 14:24Normalization of data after ENACT
- Issue comment#65Mena-SA-Kamel2025-12-02 16:10Large continuous tissue regions missing after bin-to-cell assignment despite what looks like correct segmentation
- Issue#65AlbertPlaPlanas2025-12-02 11:38Large continuous tissue regions missing after bin-to-cell assignment despite what looks like correct segmentation
- Issue#65AlbertPlaPlanas2025-12-02 11:38Large continuous tissue regions missing after bin-to-cell assignment despite what looks like correct segmentation
- Issue comment#65AlbertPlaPlanas2025-12-02 11:37Large continuous tissue regions missing after bin-to-cell assignment despite what looks like correct segmentation
- Issue comment#60lindsdudley2025-09-29 23:16IndexError when using .btf image (converted to .tiff) with ENACT
- Issue#64KunHHE2025-09-27 12:44Use cell type annotated scRNA-seq as input for annotation?
- Issue#62avpatel182025-08-15 17:42receiving this error : make: *** [Makefile:14: run_enact] Error 1
- Issue comment#59meaksu2025-08-12 18:02AttributeError: 'NoneType' object has no attribute 'predict_instances_big'
- Issue#59meaksu2025-08-12 18:02AttributeError: 'NoneType' object has no attribute 'predict_instances_big'
- Issue comment#21jade-minzlaff2025-08-05 21:00Question: Source for "Whole Slide Image" .btf file?
- Issue comment#21Sophielsn2025-08-05 19:54Question: Source for "Whole Slide Image" .btf file?
- Issue comment#56ivanmilevtues2025-08-02 22:20Visualization of the enact-pipeline codebase
- Issue#60danjah212025-07-29 20:19IndexError when using .btf image (converted to .tiff) with ENACT
- Issue#59meaksu2025-07-19 00:16AttributeError: 'NoneType' object has no attribute 'predict_instances_big'
- Issue comment#55Lyeleyl2025-06-23 15:01The cell_typist_model downloading is not working properly
- Issue#57gitMakeCoffee2025-06-19 13:57Internet access
- Issue comment#55AlbertPlaPlanas2025-06-17 20:50The cell_typist_model downloading is not working properly
- Issue comment#55Lyeleyl2025-06-17 13:08The cell_typist_model downloading is not working properly
- Issue comment#57AlbertPlaPlanas2025-06-17 09:15Internet access
- Issue#57gitMakeCoffee2025-06-17 01:29Internet access
- Pull request#56ivanmilevtues2025-06-17 00:30
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 17 stars here means stars gained during the window, not the repo's star count.