ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
active 2023-08-22 → 2025-04-21 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 609 days from 2023-08-22 to 2025-04-21. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 8 total, peak 2 in a day. Comments: 6 total, peak 2 in a day. Stars: 5 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| azufre451 | 5 | 0 | 0 | 3 |
| jiaojiaoguan | 3 | 0 | 0 | 1 |
| shiraz-shah | 2 | 0 | 0 | 0 |
| Yasas1994 | 2 | 0 | 0 | 1 |
| allen-zhan340 | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#12Yasas19942024-10-03 14:47Database download fails
- Issue comment#12azufre4512024-10-03 12:58Database download fails
- Issue#12Yasas19942024-10-03 12:11Database download fails
- Issue comment#11jiaojiaoguan2024-06-09 06:02How to select the parameter "--enrichment_preset"
- Issue comment#11azufre4512024-06-03 01:41How to select the parameter "--enrichment_preset"
- Issue#11azufre4512024-06-03 01:41How to select the parameter "--enrichment_preset"
- Issue#11jiaojiaoguan2024-06-02 04:57How to select the parameter "--enrichment_preset"
- Issue#11jiaojiaoguan2024-05-31 06:25How to select the parameter "--enrichment_preset"
- Issue#10azufre4512024-05-19 15:49can get the virome db:
- Issue comment#10allen-zhan3402023-10-13 03:58can get the virome db:
- Issue comment#10azufre4512023-10-11 05:57can get the virome db:
- Issue#10allen-zhan3402023-10-11 05:35can get the virome db:
- Issue#9shiraz-shah2023-08-22 07:43viromeqc does not work with current versions of python and samtools
- Issue#8shiraz-shah2023-08-22 06:50Can't detect LSU and SSU reads
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 5 stars here means stars gained during the window, not the repo's star count.