ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
active 2023-08-18 → 2026-03-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 933 days from 2023-08-18 to 2026-03-07. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 7 total, peak 4 in a day. Comments: 4 total, peak 1 in a day. Stars: 21 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| xianliaogithub | 5 | 0 | 0 | 1 |
| nishah-27 | 2 | 0 | 0 | 1 |
| ss6025 | 1 | 0 | 0 | 0 |
| dongwei1220 | 1 | 0 | 0 | 0 |
| jocelynnijin | 1 | 0 | 0 | 1 |
| jfnavarro | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#125jocelynnijin2025-07-14 19:32Running st pipeline unrecognized arguments
- Issue#135ss60252025-05-21 18:46Mapping with STARsolo?
- Issue#134dongwei12202025-04-11 01:29how to get unmapped read by using st_pipeline?
- Issue comment#133nishah-272024-03-04 09:56Error running the pipeline expected str, bytes or os.PathLike object, not NoneType
- Issue comment#133jfnavarro2024-03-01 08:02Error running the pipeline expected str, bytes or os.PathLike object, not NoneType
- Issue#133nishah-272024-03-01 06:17Error running the pipeline expected str, bytes or os.PathLike object, not NoneType
- Issue#131xianliaogithub2023-08-18 12:16undefined symbol: _intel_fast_memcmp
- Issue comment#131xianliaogithub2023-08-18 12:16undefined symbol: _intel_fast_memcmp
- Issue#131xianliaogithub2023-08-18 12:16undefined symbol: _intel_fast_memcmp
- Issue#131xianliaogithub2023-08-18 12:15undefined symbol: _intel_fast_memcmp
- Issue#132xianliaogithub2023-08-18 12:15barcodes position
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 21 stars here means stars gained during the window, not the repo's star count.