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Sydney-Informatics-Hub/nextflow-hpc-workshop

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active 2025-03-242025-11-19 (UTC)

Complete coverage26,720 / 26,720 hourly files (100%) · 2 absent upstream2023-08-152026-09-01 (UTC)
Events
417
Pushes
188
Pull requests
40
Issues
83
Stars
1
Forks
6

Activity over time

Daily event counts in the loaded window

Line chart, 241 days from 2025-03-24 to 2025-11-19. Pushes: 188 total, peak 30 in a day. Pull requests: 40 total, peak 18 in a day. Issues: 83 total, peak 26 in a day. Comments: 52 total, peak 37 in a day. Stars: 1 total, peak 1 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
fredjaya121541823
georgiesamaha975644
mgeaghan613141
Mitchob292720
github-actions[bot]171700
rlupat16028
mantczakaus12025
SarahBeecroft9035
eriurn4012
maelyg3012
calizilla3300
GiorgiaMori3011
kisarur2011
thangu111010

Recent activity

Latest issues, pull requests and releases

  • Issue#98mgeaghan2025-11-19 02:42
    Add exercises to "1.1.4: work harder not smarter"
  • Pull request#118mgeaghan2025-11-17 06:31
  • Issue#59georgiesamaha2025-11-15 05:56
    Explainer text: 2.5: nf-core/configs
  • Issue#58georgiesamaha2025-11-15 05:56
    Exercise: 2.5.3: Try out institutional configs
  • Issue#57georgiesamaha2025-11-15 05:56
    Exercise 2.5.2: Compare our config with the pre-made institutional configs on nf-core
  • Issue#60georgiesamaha2025-11-15 05:56
    Explainer text: 2.6: day 1 recap
  • Issue#56georgiesamaha2025-11-15 05:56
    Explainer text: 2.4: Layering configs
  • Issue#55georgiesamaha2025-11-15 05:56
    Exercise: 2.4.2: Change task resources
  • Issue#40georgiesamaha2025-11-15 05:56
    Exercise: 1.3.2: Submit FASTQC job to cluster
  • Issue#39georgiesamaha2025-11-15 05:56
    Explainer text: 1.2: HPC software
  • Issue#76georgiesamaha2025-11-15 05:55
    Explainer text: 3.5: Joint genotyping
  • Issue#74georgiesamaha2025-11-15 05:55
    Exercise: 3.5.1: Build JOINT_GENOTYPE process
  • Issue#78georgiesamaha2025-11-15 05:55
    Exercise: 3.5.3: Generate VCF stats
  • Issue#75georgiesamaha2025-11-15 05:55
    Exercise: 3.5.2: Gather all sample BAMs for joint genotyping
  • Issue#73georgiesamaha2025-11-15 05:55
    Explainer text: Genotyping
  • Issue#77georgiesamaha2025-11-15 05:55
    Exercise: 3.6.1: Build MULTIQC process
  • Issue#69georgiesamaha2025-11-15 05:55
    Exercise: 3.3.4: Add split/align/merge processes to workflow
  • Issue#71georgiesamaha2025-11-15 05:55
    Exercise: 3.4.1: Build GENOTYPE process
  • Issue#68georgiesamaha2025-11-15 05:55
    Exercise: 3.3.3: MERGE_BAMS
  • Issue#72georgiesamaha2025-11-15 05:55
    Exercise: 3.4.2: Dynamically scale CPUs with BAM size
  • Issue#70georgiesamaha2025-11-15 05:55
    Explainer text: 3.3: Alignment
  • Issue#67georgiesamaha2025-11-15 05:55
    Exercise: 3.3.2: Build ALIGN process
  • Issue#64georgiesamaha2025-11-15 05:55
    Exercise: 3.2.3: Dynamic resources
  • Issue#62georgiesamaha2025-11-15 05:55
    Exercise: 3.2.1: Build FASTQC process
  • Issue#61georgiesamaha2025-11-15 05:55
    Explainer text: 3.1: Day 2 intro: DIY Nextflow on HPC

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 1 stars here means stars gained during the window, not the repo's star count.