Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
active 2023-08-15 → 2025-11-01 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 810 days from 2023-08-15 to 2025-11-01. Pushes: 114 total, peak 39 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 45 total, peak 3 in a day. Comments: 65 total, peak 4 in a day. Stars: 43 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| xhelenfu | 91 | 61 | 0 | 23 |
| nick-robo | 53 | 53 | 0 | 0 |
| pakiessling | 10 | 0 | 0 | 3 |
| yulijia | 9 | 0 | 0 | 6 |
| meaksu | 7 | 0 | 0 | 5 |
| Yifan-debug | 7 | 0 | 0 | 6 |
| diala-ar | 5 | 0 | 0 | 4 |
| sbudoff | 4 | 0 | 0 | 2 |
| Ceyhun-Alar | 3 | 0 | 0 | 1 |
| chenyhvvvv | 3 | 0 | 0 | 2 |
| Liyongheng-03 | 3 | 0 | 0 | 2 |
| johnyaku | 3 | 0 | 0 | 2 |
| Beiusxzw | 3 | 0 | 0 | 2 |
| aqlkzf | 3 | 0 | 0 | 1 |
| lhoranportelance | 2 | 0 | 0 | 0 |
| shriyasmith | 2 | 0 | 0 | 1 |
| JiaScript | 2 | 0 | 0 | 1 |
| PhilCollinsChidi | 2 | 0 | 0 | 1 |
| yuerua | 2 | 0 | 0 | 1 |
| falsetry1514 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#32DarioS2025-09-18 07:00Cellpose v4 compatibility
- Issue#32simonmfr2025-07-28 07:28Cellpose v4 compatibility
- Issue#31jpark272025-07-23 08:24[BIDCell] morphology_focus_0000.ome.tif
- Issue comment#28Liyongheng-032025-05-03 02:14how to get a morphology_mip.ome.tif
- Issue comment#28Liyongheng-032025-05-01 03:10how to get a morphology_mip.ome.tif
- Issue#28Liyongheng-032025-04-10 09:01how to get a morphology_mip.ome.tif
- Issue#27Nakyung2102025-01-30 19:27ConnectionResetError: [Errno 104] Connection reset by peer
- Issue comment#26sbudoff2024-10-10 21:56KeyError related to UnassignedCodeword
- Issue#26sbudoff2024-10-10 21:56KeyError related to UnassignedCodeword
- Issue comment#26sbudoff2024-10-10 21:43KeyError related to UnassignedCodeword
- Issue#26sbudoff2024-10-10 20:57KeyError related to UnassignedCodeword
- Issue comment#17ChiaraCaprioli2024-09-22 19:14Training Step ValueError
- Issue#25falsetry15142024-09-10 08:46Suggestion: add the choice of H&E stains to nuclei segment instead of DAPI stains
- Issue comment#22Yifan-debug2024-09-05 13:08Can I also use this method if I don't have reference
- Issue comment#22xhelenfu2024-09-04 23:20Can I also use this method if I don't have reference
- Issue comment#22Yifan-debug2024-09-04 12:21Can I also use this method if I don't have reference
- Issue comment#24xhelenfu2024-09-04 11:58Details of datasets
- Issue#24raman912024-09-04 10:39Details of datasets
- Issue comment#22xhelenfu2024-08-29 22:20Can I also use this method if I don't have reference
- Issue comment#22Yifan-debug2024-08-29 12:59Can I also use this method if I don't have reference
- Issue comment#23Beiusxzw2024-08-26 10:59Error Encountered During Training
- Issue comment#22xhelenfu2024-08-26 07:03Can I also use this method if I don't have reference
- Issue comment#23xhelenfu2024-08-26 06:58Error Encountered During Training
- Issue comment#23Beiusxzw2024-08-26 01:32Error Encountered During Training
- Issue comment#22Yifan-debug2024-08-25 16:01Can I also use this method if I don't have reference
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 43 stars here means stars gained during the window, not the repo's star count.