Join subcellular Visium HD bins into cells
active 2025-04-17 → 2026-04-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 360 days from 2025-04-17 to 2026-04-11. Pushes: 4 total, peak 3 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 15 total, peak 2 in a day. Comments: 27 total, peak 4 in a day. Stars: 26 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ktpolanski | 21 | 4 | 0 | 13 |
| AtlasMaroc | 4 | 0 | 0 | 4 |
| npotemkin | 3 | 0 | 0 | 1 |
| liangxs7015 | 3 | 0 | 0 | 2 |
| isantana-bio | 2 | 0 | 0 | 1 |
| HDEzhsw | 1 | 0 | 0 | 0 |
| yaolei-6 | 1 | 0 | 0 | 1 |
| mei-du | 1 | 0 | 0 | 1 |
| chiwwong | 1 | 0 | 0 | 0 |
| dfgao | 1 | 0 | 0 | 1 |
| nadavyayon | 1 | 0 | 0 | 1 |
| larsenprokop | 1 | 0 | 0 | 0 |
| YuyanRuan | 1 | 0 | 0 | 0 |
| jairaj-mathur | 1 | 0 | 0 | 0 |
| ChristelleBrest | 1 | 0 | 0 | 1 |
| basesLoaded | 1 | 0 | 0 | 0 |
| maltekuehl | 1 | 0 | 0 | 0 |
| JingAnyaSun | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#75AtlasMaroc2026-01-16 11:05Numerical Overflow when using stardist
- Issue comment#75ktpolanski2026-01-16 10:44Numerical Overflow when using stardist
- Issue comment#75AtlasMaroc2026-01-16 09:14Numerical Overflow when using stardist
- Issue comment#75ktpolanski2026-01-15 14:52Numerical Overflow when using stardist
- Issue comment#75AtlasMaroc2026-01-15 14:47Numerical Overflow when using stardist
- Issue comment#75ktpolanski2026-01-15 14:36Numerical Overflow when using stardist
- Issue comment#4yaolei-62026-01-15 12:04Questions Regarding bin2cell Precision and Compatibility with RCTD for Single-Cell Analysis
- Issue comment#73ChristelleBrest2025-12-11 14:23Export Bin2cell segmentation to QuPath
- Issue comment#72AtlasMaroc2025-11-10 09:26Space Ranger Image
- Issue comment#71liangxs70152025-11-06 11:52bin2cell.stardist: Found 0 objects
- Issue comment#71liangxs70152025-11-02 16:04bin2cell.stardist: Found 0 objects
- Issue#71liangxs70152025-11-02 14:07bin2cell.stardist: Found 0 objects
- Issue comment#28ktpolanski2025-10-23 15:22how to load local model for b2c.stardist function
- Issue comment#70ktpolanski2025-09-19 22:11Allow different segmentation models, use dependency groups
- Issue#70maltekuehl2025-09-19 08:01Allow different segmentation models, use dependency groups
- Issue comment#69JingAnyaSun2025-09-16 14:37Can I retrieve the barcodes of each cell from cdata?
- Issue comment#69ktpolanski2025-09-15 20:37Can I retrieve the barcodes of each cell from cdata?
- Issue#69ktpolanski2025-09-15 20:37Can I retrieve the barcodes of each cell from cdata?
- Issue comment#68ktpolanski2025-09-09 08:27destripe function to produce 8um bins
- Issue comment#68nadavyayon2025-09-03 09:06destripe function to produce 8um bins
- Issue#68YuyanRuan2025-09-02 01:58destripe function to produce 8um bins
- Issue#67ktpolanski2025-08-29 14:58bin2cell output (h5ad file) cannot be properly loaded into R
- Issue comment#66npotemkin2025-08-14 00:32scaled_he_image returning off-center image
- Issue#66npotemkin2025-08-14 00:32scaled_he_image returning off-center image
- Issue#66npotemkin2025-08-13 23:40scaled_he_image returning off-center image
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 26 stars here means stars gained during the window, not the repo's star count.