Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
active 2024-06-01 → 2026-02-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 633 days from 2024-06-01 to 2026-02-23. Pushes: 27 total, peak 14 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 8 total, peak 2 in a day. Comments: 44 total, peak 5 in a day. Stars: 8 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| brianjohnhaas | 47 | 26 | 0 | 21 |
| direnardak | 7 | 0 | 0 | 5 |
| mariasolruiz | 7 | 0 | 0 | 7 |
| xiaolinzhu | 6 | 0 | 0 | 6 |
| rocanja | 3 | 0 | 0 | 1 |
| Admitabc | 3 | 0 | 0 | 2 |
| gianfilippo | 3 | 0 | 0 | 1 |
| qinqian | 1 | 1 | 0 | 0 |
| chstubbe | 1 | 0 | 0 | 1 |
| QifengSun | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#142chstubbe2026-01-13 14:25Boosting method + training
- Issue comment#141gianfilippo2025-10-03 13:40large number of somatic mutations in tumor RNAseq
- Issue#141gianfilippo2025-10-03 13:40large number of somatic mutations in tumor RNAseq
- Issue#141gianfilippo2025-10-03 04:42large number of somatic mutations in tumor RNAseq
- Issue comment#140rocanja2024-11-18 23:23base_ columns in the cancer.vcf output file
- Issue#140rocanja2024-11-18 23:23base_ columns in the cancer.vcf output file
- Issue comment#140brianjohnhaas2024-11-18 13:03base_ columns in the cancer.vcf output file
- Issue#140rocanja2024-11-18 05:16base_ columns in the cancer.vcf output file
- Issue comment#138Admitabc2024-08-31 06:33PctExtPos
- Issue#138Admitabc2024-08-31 06:33PctExtPos
- Issue comment#138brianjohnhaas2024-08-30 11:46PctExtPos
- Issue comment#138Admitabc2024-08-30 03:34PctExtPos
- Issue comment#138brianjohnhaas2024-08-29 12:04PctExtPos
- Issue comment#136brianjohnhaas2024-08-22 11:34Running scRNAseq pipeline with fastq files
- Issue comment#136direnardak2024-08-21 18:07Running scRNAseq pipeline with fastq files
- Issue comment#135brianjohnhaas2024-08-12 00:11Not able to run CTAT Mutations
- Issue comment#135xiaolinzhu2024-08-11 22:52Not able to run CTAT Mutations
- Issue comment#135brianjohnhaas2024-08-10 00:26Not able to run CTAT Mutations
- Issue comment#135xiaolinzhu2024-08-09 14:02Not able to run CTAT Mutations
- Issue comment#135brianjohnhaas2024-08-09 11:19Not able to run CTAT Mutations
- Issue comment#135xiaolinzhu2024-08-09 07:32Not able to run CTAT Mutations
- Issue comment#135brianjohnhaas2024-08-08 13:22Not able to run CTAT Mutations
- Issue comment#137brianjohnhaas2024-08-08 12:49Annotate CRAVAT error
- Issue#137QifengSun2024-08-08 01:59Annotate CRAVAT error
- Issue comment#135xiaolinzhu2024-08-07 22:30Not able to run CTAT Mutations
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 8 stars here means stars gained during the window, not the repo's star count.