Tool for fully-automated inference of species trees from raw genome assemblies
active 2024-05-26 → 2026-08-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 811 days from 2024-05-26 to 2026-08-14. Pushes: 99 total, peak 7 in a day. Pull requests: 39 total, peak 6 in a day. Issues: 28 total, peak 3 in a day. Comments: 65 total, peak 5 in a day. Stars: 38 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ang037 | 143 | 65 | 34 | 34 |
| github-actions[bot] | 32 | 32 | 0 | 0 |
| enriquepola1996 | 8 | 0 | 0 | 5 |
| usergenomics13 | 6 | 0 | 0 | 4 |
| yatisht | 6 | 2 | 2 | 2 |
| stachyris | 6 | 0 | 1 | 4 |
| gotouerina | 5 | 0 | 0 | 3 |
| Haimingwe | 3 | 0 | 0 | 2 |
| heziqing | 3 | 0 | 0 | 2 |
| Biolyj | 3 | 0 | 0 | 1 |
| XMTian | 2 | 0 | 0 | 1 |
| ohickl | 2 | 0 | 0 | 1 |
| Pooshman | 2 | 0 | 2 | 0 |
| shoyosato | 2 | 0 | 0 | 1 |
| licheng0921 | 2 | 0 | 0 | 2 |
| HiranyaSudasinghe | 1 | 0 | 0 | 1 |
| Mvwestbury | 1 | 0 | 0 | 0 |
| SimonaSecomandi | 1 | 0 | 0 | 0 |
| austinchipps | 1 | 0 | 0 | 0 |
| desmodus1984 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#45ang0372026-02-12 03:01Running ROADIES Singularity Image (roadies.sif) - Missing Scripts/Dependencies
- Issue comment#58ang0372025-11-06 20:01Roadies seems to finish successfully but the final tree is missing
- Issue comment#58chulbioinfo2025-11-06 16:20Roadies seems to finish successfully but the final tree is missing
- Issue comment#58ang0372025-11-06 03:48Roadies seems to finish successfully but the final tree is missing
- Issue#58SimonaSecomandi2025-11-06 02:17Roadies seems to finish successfully but the final tree is missing
- Issue comment#56XMTian2025-10-31 10:05Only one iteration and no roadies_stats.nwk, roadies.nwk generated
- Issue#56XMTian2025-10-29 08:29Only one iteration and no roadies_stats.nwk, roadies.nwk generated
- Issue#56ang0372025-10-28 16:27Only one iteration and no roadies_stats.nwk, roadies.nwk generated
- Issue comment#55ang0372025-10-03 03:56Checkpointing in ROADIES
- Issue comment#54ang0372025-07-13 05:51Problems with installing the new version
- Issue#54ang0372025-07-13 05:51Problems with installing the new version
- Issue comment#54enriquepola19962025-07-13 02:49Problems with installing the new version
- Issue comment#54ang0372025-07-13 01:15Problems with installing the new version
- Issue comment#54enriquepola19962025-07-13 00:47Problems with installing the new version
- Issue comment#54ang0372025-07-13 00:42Problems with installing the new version
- Issue#54enriquepola19962025-07-12 04:46Problems with installing the new version
- Issue#53ang0372025-07-08 05:26roadies.nwk in output_files directory not generated for the test dataset
- Issue comment#53HiranyaSudasinghe2025-07-04 13:56roadies.nwk in output_files directory not generated for the test dataset
- Issue comment#52ang0372025-07-02 14:25Guidance on Parameter Settings for Bacterial Strain-Level Phylogeny
- Issue comment#53ang0372025-07-02 14:24roadies.nwk in output_files directory not generated for the test dataset
- Issue comment#52ang0372025-06-23 05:07Guidance on Parameter Settings for Bacterial Strain-Level Phylogeny
- Issue comment#52ohickl2025-06-19 08:59Guidance on Parameter Settings for Bacterial Strain-Level Phylogeny
- Issue comment#52ang0372025-06-18 14:58Guidance on Parameter Settings for Bacterial Strain-Level Phylogeny
- Issue#52ohickl2025-06-17 14:44Guidance on Parameter Settings for Bacterial Strain-Level Phylogeny
- Issue comment#50heziqing2025-05-29 01:09Error: gene_tree_merged.nwk: No such file or directory
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 38 stars here means stars gained during the window, not the repo's star count.