DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
active 2024-01-04 → 2025-12-27 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 724 days from 2024-01-04 to 2025-12-27. Pushes: 19 total, peak 4 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 23 total, peak 8 in a day. Comments: 26 total, peak 3 in a day. Stars: 20 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| umahsn | 30 | 19 | 0 | 11 |
| kaichop | 7 | 0 | 0 | 0 |
| HLHsieh | 5 | 0 | 0 | 4 |
| hewei-nju | 4 | 0 | 0 | 1 |
| Modernism-01 | 3 | 0 | 0 | 1 |
| xscapintime | 3 | 0 | 0 | 1 |
| ahong017 | 2 | 0 | 0 | 0 |
| spoweekkk | 2 | 0 | 0 | 1 |
| sachingadakh | 2 | 0 | 0 | 2 |
| HW-Superior | 2 | 0 | 0 | 1 |
| qtran1 | 1 | 0 | 0 | 0 |
| inenj | 1 | 0 | 0 | 0 |
| zzangcy | 1 | 0 | 0 | 1 |
| Jeff-Field | 1 | 0 | 0 | 1 |
| gxAlan233 | 1 | 0 | 0 | 0 |
| ShubhSingh07 | 1 | 0 | 0 | 1 |
| walidabualafia | 1 | 0 | 0 | 1 |
| aCoalBall | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#42ahong0172025-09-11 11:22Clarification on DeepMod2 output columns
- Issue comment#42umahsn2025-09-08 16:47Clarification on DeepMod2 output columns
- Issue#42ahong0172025-08-30 19:33Clarification on DeepMod2 output columns
- Issue#39inenj2025-07-30 18:47RuntimeError: Invalid: Input data failed to decompress using zstd
- Issue comment#30ShubhSingh072025-06-01 05:35No module named 'tensorflow.keras'
- Issue#37xscapintime2025-03-26 01:05Not detecting moving tables in aligned bam files
- Issue comment#37xscapintime2025-03-26 01:05Not detecting moving tables in aligned bam files
- Issue#36xscapintime2025-03-04 05:44Error in Process in calling methylation from aligned bam
- Issue comment#33umahsn2025-01-17 02:28Miss Error "KeyError: 'strides_per_base is not a file in the archive'" when trying to train deepmod2
- Issue comment#33spoweekkk2025-01-16 22:32Miss Error "KeyError: 'strides_per_base is not a file in the archive'" when trying to train deepmod2
- Issue#33spoweekkk2025-01-16 22:03Miss Error "KeyError: 'strides_per_base is not a file in the archive'"
- Issue comment#32umahsn2025-01-15 02:25Encountering errors running aligned BAM files
- Issue comment#29zzangcy2024-09-03 02:14Error！Deepmod2 analysis of human methylation
- Issue comment#27sachingadakh2024-08-11 13:30some output files are missing
- Issue comment#27umahsn2024-08-11 13:28some output files are missing
- Issue comment#27sachingadakh2024-08-11 12:22some output files are missing
- Issue comment#27umahsn2024-08-09 20:00some output files are missing
- Issue#28gxAlan2332024-08-05 04:44About the compatiblity of Dorado basecalling module
- Issue#26aCoalBall2024-07-18 05:21Training data from HG002, HG003 and HG004
- Issue comment#26umahsn2024-06-07 22:27Training data from HG002, HG003 and HG004
- Issue comment#25umahsn2024-06-07 21:22About guppy model
- Issue comment#25HW-Superior2024-06-03 02:10About guppy model
- Issue comment#25umahsn2024-05-09 18:17About guppy model
- Issue#25HW-Superior2024-05-08 02:38About guppy model
- Releaseumahsn2024-04-16 00:32v0.3.2
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.