A computational method designed to identify and quantify IPA sites via the examination of contextual sequence patterns and RNA-seq reads alignment.
active 2024-02-20 → 2025-04-27 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 433 days from 2024-02-20 to 2025-04-27. Pushes: 8 total, peak 4 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 2 in a day. Comments: 15 total, peak 3 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| liuxc1995 | 13 | 1 | 0 | 11 |
| YY-TMU | 7 | 7 | 0 | 0 |
| KMbio43 | 2 | 0 | 0 | 1 |
| CTLife | 2 | 0 | 0 | 1 |
| cloudyrainy-zh | 2 | 0 | 0 | 0 |
| Hrision | 1 | 0 | 0 | 1 |
| guowb9 | 1 | 0 | 0 | 0 |
| Badman1025 | 1 | 0 | 0 | 1 |
| lizhenli8888 | 1 | 0 | 0 | 0 |
| Toutouflipi | 1 | 0 | 0 | 0 |
| tailana703 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#14KMbio432025-04-27 00:38InPACT_polyAsites.hg38.saf
- Issue comment#14liuxc19952025-04-24 05:56InPACT_polyAsites.hg38.saf
- Issue#14KMbio432025-04-10 03:16InPACT_polyAsites.hg38.saf
- Issue comment#13liuxc19952025-04-02 01:58Bug: KeyError in InPACT_quantify when calculating gene expression
- Issue comment#11liuxc19952025-04-02 01:57How to get the potential polyA sites for other species？
- Issue#11liuxc19952025-04-02 01:57How to get the potential polyA sites for other species？
- Issue#11guowb92025-01-09 08:23How to get the potential polyA sites for other species？
- Issue comment#10Hrision2024-10-07 00:18recommended Fasta file
- Issue comment#6liuxc19952024-09-05 02:44Calculate usage of IPA sites
- Issue comment#6Badman10252024-09-05 02:14Calculate usage of IPA sites
- Issue comment#6liuxc19952024-09-05 01:27Calculate usage of IPA sites
- Issue comment#8liuxc19952024-07-19 03:21How to deal with gencode gtf file
- Issue comment#9liuxc19952024-07-10 03:52ipa_usage.txt file
- Issue#9lizhenli88882024-07-10 02:33ipa_usage.txt file
- Issue comment#8liuxc19952024-07-06 00:54How to deal with gencode gtf file
- Issue comment#7liuxc19952024-06-26 01:20getopt illegal option --o
- Issue#7tailana7032024-06-20 00:59getopt illegal option --o
- Issue comment#6liuxc19952024-05-05 00:42Calculate usage of IPA sites
- Issue#6cloudyrainy-zh2024-05-03 06:27Calculate usage of IPA sites
- Issue#5cloudyrainy-zh2024-05-03 06:22Calculate usage of IPA sites
- Issue comment#3liuxc19952024-04-19 03:31IPA ref for other models
- Issue#3Toutouflipi2024-04-18 05:25IPA ref for other models
- Issue comment#2CTLife2024-03-30 21:12FileNotFoundError: [Errno 2] No such file or directory: 'xxxxxxx/0.data_prepare
- Issue#2CTLife2024-03-30 20:29FileNotFoundError: [Errno 2] No such file or directory: 'xxxxxxx/0.data_prepare
- ReleaseYY-TMU2024-02-24 11:17V1.0
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.