A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
active 2023-08-28 → 2026-03-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 939 days from 2023-08-28 to 2026-03-23. Pushes: 17 total, peak 4 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 13 total, peak 2 in a day. Comments: 22 total, peak 4 in a day. Stars: 38 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| JiaShun-Xiao | 30 | 16 | 0 | 13 |
| ChenJin2020 | 9 | 0 | 0 | 4 |
| HelloWorldLTY | 4 | 0 | 0 | 3 |
| aqlkzf | 3 | 0 | 0 | 2 |
| lkmdeer | 1 | 0 | 0 | 0 |
| xwanaf | 1 | 1 | 0 | 0 |
| FelixZ95 | 1 | 0 | 0 | 0 |
| edgarfelizmenio | 1 | 0 | 0 | 0 |
| mrichter23 | 1 | 0 | 0 | 0 |
| PietroAndrei | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#21JiaShun-Xiao2025-08-26 03:36Model producing nan for loss, ema_loss and grad_norm after ~7000 iterations
- Issue#20edgarfelizmenio2025-06-12 06:57csbdeep not mentioned in environment.yml
- Issue#19mrichter232025-05-28 08:58Can SpatialScope run on fluorescence images?
- Issue#16FelixZ952024-10-27 08:19How to annotate an empty spot?
- Issue comment#12aqlkzf2024-03-02 12:39Issue with Accessing Raw Data Link for Human Heart scRNA-seq Atlas
- Issue#12aqlkzf2024-03-02 12:39Issue with Accessing Raw Data Link for Human Heart scRNA-seq Atlas
- Issue comment#12aqlkzf2024-03-02 08:26Issue with Accessing Raw Data Link for Human Heart scRNA-seq Atlas
- Issue comment#10JiaShun-Xiao2024-02-26 03:35Out of Memory Issue During Cell Type Identification Step on 256GB RAM Machine
- Issue comment#11JiaShun-Xiao2024-02-26 03:29How to perform the imputation task on a new dataset without cell types
- Issue#11lkmdeer2024-02-21 06:50How to perform the imputation task on a new dataset without cell types
- Issue#10ChenJin20202024-02-11 15:01Out of Memory Issue During Cell Type Identification Step on 256GB RAM Machine
- Issue comment#8ChenJin20202024-02-11 13:43scRNA-seq reference integration
- Issue#8ChenJin20202024-02-11 13:43scRNA-seq reference integration
- Issue comment#8ChenJin20202024-02-08 22:12scRNA-seq reference integration
- Issue comment#8JiaShun-Xiao2024-02-04 02:34scRNA-seq reference integration
- Issue comment#9ChenJin20202024-02-03 13:03TypeError during Nuclei Segmentation with Custom Dataset in SpatialScope
- Issue#9ChenJin20202024-02-03 13:03TypeError during Nuclei Segmentation with Custom Dataset in SpatialScope
- Issue#9ChenJin20202024-02-02 23:11TypeError during Nuclei Segmentation with Custom Dataset in SpatialScope
- Issue comment#6ChenJin20202024-02-01 03:07KeyError of step 3
- Issue comment#3JiaShun-Xiao2024-01-25 06:57Cannot reproduce the imputation results of SpatialScope
- Issue comment#3HelloWorldLTY2024-01-25 05:46Cannot reproduce the imputation results of SpatialScope
- Issue comment#3JiaShun-Xiao2024-01-25 02:40Cannot reproduce the imputation results of SpatialScope
- Issue comment#3JiaShun-Xiao2024-01-25 02:39Cannot reproduce the imputation results of SpatialScope
- Issue comment#4JiaShun-Xiao2024-01-24 06:47conda environment configuration issues
- Issue comment#6JiaShun-Xiao2024-01-24 06:44KeyError of step 3
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 38 stars here means stars gained during the window, not the repo's star count.