A Python toolkit for subcellular analysis of spatial transcriptomics data
active 2024-11-02 → 2026-01-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 432 days from 2024-11-02 to 2026-01-07. Pushes: 33 total, peak 8 in a day. Pull requests: 23 total, peak 6 in a day. Issues: 34 total, peak 7 in a day. Comments: 33 total, peak 5 in a day. Stars: 11 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ckmah | 84 | 28 | 23 | 16 |
| zhoutianrui-tongji | 10 | 0 | 0 | 4 |
| Melody-cell | 6 | 0 | 0 | 4 |
| aster-ww | 3 | 0 | 0 | 1 |
| nklkhlr | 2 | 0 | 0 | 1 |
| byee4 | 2 | 2 | 0 | 0 |
| Copilot | 2 | 2 | 0 | 0 |
| huoyuying | 2 | 0 | 0 | 2 |
| sharvari14 | 2 | 0 | 0 | 2 |
| Yangyizehui | 2 | 0 | 0 | 1 |
| wgmao | 1 | 0 | 0 | 0 |
| pakiessling | 1 | 0 | 0 | 1 |
| IcecreamArtist | 1 | 0 | 0 | 0 |
| dylanclam12 | 1 | 1 | 0 | 0 |
| haipinghao | 1 | 0 | 0 | 0 |
| amitjavilaventura | 1 | 0 | 0 | 0 |
| review-notebook-app[bot] | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#193ckmah2025-11-12 22:36
- Issue comment#190pakiessling2025-09-30 09:02[BUG] Installation issue: resolution-too-deep
- Issue comment#191zhoutianrui-tongji2025-09-17 08:08After successfully running bt.tl.fe_fazal2019(sdata, batch_size=50000), can I obtain which subcellular structure each transcript belongs to?
- Issue#191zhoutianrui-tongji2025-09-17 08:07After successfully running bt.tl.fe_fazal2019(sdata, batch_size=50000), can I obtain which subcellular structure each transcript belongs to?
- Issue#190IcecreamArtist2025-08-27 07:49[BUG] Installation issue
- Issue comment#184sharvari142025-08-24 23:57bt.tl.colocation error
- Issue comment#184sharvari142025-08-21 03:05bt.tl.colocation error
- Issue#189haipinghao2025-07-23 21:05bt.tl.fe_xia2019 or bt.tl.fe_fazal2019 error
- Issue#188haipinghao2025-07-23 18:17Image scale off for xenium data
- Issue#187haipinghao2025-07-01 19:34[BUG]Installation issue: ModuleNotFoundError: No module named 'setuptools.dep_util'
- Issue comment#179review-notebook-app[bot]2025-06-22 02:37Daskify features
- Issue comment#184Melody-cell2025-05-21 04:41bt.tl.colocation error
- Issue#184Melody-cell2025-05-21 04:41bt.tl.colocation error
- Issue comment#184ckmah2025-05-20 19:04bt.tl.colocation error
- Issue comment#184Melody-cell2025-05-19 11:28bt.tl.colocation error
- Issue#185aster-ww2025-05-16 21:39DAPI image of merfish U2OS data
- Issue comment#185aster-ww2025-05-16 21:39DAPI image of merfish U2OS data
- Issue comment#185ckmah2025-05-16 14:11DAPI image of merfish U2OS data
- Issue comment#184ckmah2025-05-16 14:05bt.tl.colocation error
- Issue comment#184Melody-cell2025-05-16 11:03bt.tl.colocation error
- Issue comment#184Melody-cell2025-05-16 02:28bt.tl.colocation error
- Issue#185aster-ww2025-05-15 03:45DAPI image of merfish U2OS data
- Issue comment#181ckmah2025-05-14 21:03When i run sdata = bt.io.prep(sdata, feature_key = "feature_name")||| KeyError: 'index_right'
- Issue comment#184ckmah2025-05-14 21:00bt.tl.colocation error
- Issue#184Melody-cell2025-05-12 11:48bt.tl.colocation error
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 11 stars here means stars gained during the window, not the repo's star count.