End-to-end simulation of nanopore sequencing signals with feed-forward transformers
active 2024-08-12 → 2025-11-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 463 days from 2024-08-12 to 2025-11-17. Pushes: 82 total, peak 7 in a day. Pull requests: 8 total, peak 2 in a day. Issues: 17 total, peak 2 in a day. Comments: 26 total, peak 3 in a day. Stars: 15 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| denisbeslic | 121 | 82 | 7 | 19 |
| Omer-Sella | 3 | 0 | 0 | 2 |
| cjwoodruff50 | 3 | 0 | 0 | 3 |
| persuelmk | 2 | 0 | 0 | 1 |
| dependabot[bot] | 2 | 0 | 1 | 1 |
| maximilianmordig | 1 | 0 | 0 | 0 |
| AntonS-bio | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#24denisbeslic2025-11-17 10:35the seq_kmer value set to 5 for R9.4.1 data
- Issue comment#24persuelmk2025-11-12 14:36the seq_kmer value set to 5 for R9.4.1 data
- Issue#24persuelmk2025-11-11 15:44the seq_kmer value set to 5 for R9.4.1 data
- Issue comment#22denisbeslic2025-10-29 22:22Changed Read id Problem
- Releasedenisbeslic2025-06-16 10:47v0.3.3
- Issue comment#18denisbeslic2025-06-02 09:05Read Phred score calculated using the mean error rate along each read (Qmean) has a bimodal distribution.
- Issue comment#18cjwoodruff502025-06-02 07:18Read Phred score calculated using the mean error rate along each read (Qmean) has a bimodal distribution.
- Issue comment#18cjwoodruff502025-06-02 03:31Read Phred score calculated using the mean error rate along each read (Qmean) has a bimodal distribution.
- Issue comment#18cjwoodruff502025-05-30 00:48Read Phred score calculated using the mean error rate along each read (Qmean) has a bimodal distribution.
- Issue comment#18denisbeslic2025-05-29 14:56Read Phred score calculated using the mean error rate along each read (Qmean) has a bimodal distribution.
- Issue comment#17denisbeslic2025-05-26 19:52Simulated reads error rate
- Issue comment#17denisbeslic2025-05-22 11:07Simulated reads error rate
- Issue comment#17denisbeslic2025-05-12 08:51Simulated reads error rate
- Issue#17AntonS-bio2025-05-09 13:36Simulated reads error rate
- Issue#5denisbeslic2025-04-02 15:45Improved DNA Embeddings
- Issue comment#16denisbeslic2025-03-12 13:27Introduction to the config file
- Issue comment#16denisbeslic2025-03-11 16:05Introduction to the config file
- Issue comment#16denisbeslic2025-03-11 14:52Introduction to the config file
- Issue comment#16denisbeslic2025-03-11 08:51Introduction to the config file
- Issue#14denisbeslic2025-03-10 15:13Add check for genome mode regarding length of input data
- Issue comment#10denisbeslic2025-03-10 15:13Move config seqkmer parameter to profile dict
- Issue#10denisbeslic2025-03-10 15:13Move config seqkmer parameter to profile dict
- Issue#15maximilianmordig2025-02-26 16:47Data preprocessing + evaluation
- Issue comment#13Omer-Sella2025-02-26 12:24Not getting an output file (True Prediction dataset size 0)
- Issue comment#13denisbeslic2025-02-26 12:18Not getting an output file (True Prediction dataset size 0)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 15 stars here means stars gained during the window, not the repo's star count.