A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
active 2023-08-26 → 2026-01-27 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 886 days from 2023-08-26 to 2026-01-27. Pushes: 33 total, peak 6 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 11 total, peak 1 in a day. Comments: 15 total, peak 2 in a day. Stars: 30 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| lhc70000 | 39 | 33 | 0 | 6 |
| HelloWorldLTY | 6 | 0 | 0 | 4 |
| SammiLyu | 3 | 0 | 0 | 2 |
| chiwwong | 3 | 0 | 0 | 1 |
| fanyue322 | 3 | 0 | 0 | 0 |
| officialprofile | 2 | 0 | 0 | 1 |
| Peg-Wu | 1 | 0 | 0 | 0 |
| RayRay-23 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#20officialprofile2025-11-17 10:473D simulations
- Issue comment#20officialprofile2025-11-17 10:473D simulations
- Issue comment#21lhc700002025-11-12 22:45DEG genes from simulations
- Issue comment#19RayRay-232025-08-08 02:17TF effect on genes in GIV is 0
- Issue#17Zwygit22025-07-18 16:39When we choose to run CCI ,the cell_time of the result are all 0
- Issue comment#15lhc700002025-06-15 19:41Confusion about simulating single-cell RNA data
- Issue#15Peg-Wu2025-06-12 08:03Confusion about simulating single-cell RNA data
- Issue comment#13SammiLyu2025-04-24 02:32How to simulate data with one TF activity being perturbed?
- Issue comment#13SammiLyu2025-04-23 03:16How to simulate data with one TF activity being perturbed?
- Issue#13SammiLyu2025-04-22 23:00How to simulate data with one TF activity being perturbed?
- Issue#10fanyue3222024-11-01 07:43Simulate genes are regulated by more than two peaks
- Issue#10fanyue3222024-07-10 06:28Simulate genes are regulated by more than two peaks
- Issue#10fanyue3222024-06-24 02:03Simulate genes are regulated by more than two peaks
- Issue comment#9lhc700002024-06-12 23:50Personalized RIV and region_to_gene tables
- Issue comment#8chiwwong2024-02-17 00:05Error during installation
- Issue#8chiwwong2024-02-17 00:05Error during installation
- Issue#8chiwwong2024-02-16 20:35Error during installation
- Issue comment#7HelloWorldLTY2024-01-20 21:53Strange expression patterns of simulated atacseq data
- Issue comment#7lhc700002024-01-19 04:48Strange expression patterns of simulated atacseq data
- Issue comment#7HelloWorldLTY2024-01-12 19:16Strange expression patterns of simulated atacseq data
- Issue comment#7HelloWorldLTY2024-01-12 06:23Strange expression patterns of simulated atacseq data
- Issue comment#7HelloWorldLTY2024-01-07 14:26Strange expression patterns of simulated atacseq data
- Issue comment#7lhc700002024-01-07 07:34Strange expression patterns of simulated atacseq data
- Issue#6HelloWorldLTY2023-12-22 13:43Can we use real data as base to simualte datasets similar to the real dataset?
- Issue comment#6lhc700002023-12-02 17:34Can we use real data as base to simualte datasets similar to the real dataset?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 30 stars here means stars gained during the window, not the repo's star count.