Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
active 2023-08-17 → 2026-01-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 876 days from 2023-08-17 to 2026-01-08. Pushes: 1 total, peak 1 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 8 total, peak 1 in a day. Comments: 12 total, peak 2 in a day. Stars: 46 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| Zuricho | 3 | 1 | 0 | 1 |
| Lili-irtyd | 2 | 0 | 0 | 2 |
| erdaqorri | 2 | 0 | 0 | 1 |
| Kangfengyuuuu | 2 | 0 | 0 | 1 |
| hermannschwaerzlerUIBK | 2 | 0 | 0 | 2 |
| rocketman8080 | 1 | 0 | 0 | 0 |
| luwei0917 | 1 | 0 | 0 | 1 |
| von-elfen | 1 | 0 | 0 | 1 |
| Serious-Huang | 1 | 0 | 0 | 1 |
| Autumn-Roy | 1 | 0 | 0 | 0 |
| gilspeyer | 1 | 0 | 0 | 1 |
| Tiramisu023 | 1 | 0 | 0 | 0 |
| Licko0909 | 1 | 0 | 0 | 0 |
| johnire80 | 1 | 0 | 0 | 0 |
| shiratorisasu | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#49Lili-irtyd2024-09-25 08:06Wrong mgnify db name
- Issue comment#22Lili-irtyd2024-09-25 07:28Too many command-line arguments
- Issue comment#46Zuricho2024-05-18 07:58ValueError: Minimization failed after 100 attempts.
- Issue#46Zuricho2024-05-18 07:58ValueError: Minimization failed after 100 attempts.
- Issue comment#46Kangfengyuuuu2024-05-15 10:47ValueError: Minimization failed after 100 attempts.
- Issue#46Kangfengyuuuu2024-05-15 06:31ValueError: Minimization failed after 100 attempts.
- Issue comment#38luwei09172024-05-12 16:26Multimer prediction error: "ValueError: Unable to retrieve parameter 'scale' for module......."
- Issue#45Tiramisu0232024-04-18 05:36How to run ParaFold in the CPU mode on a machine with GPU.
- Issue#44erdaqorri2024-02-03 14:35kalign glitch
- Issue#43Autumn-Roy2024-01-22 02:19Why not recommend install by docker?
- Issue comment#21Serious-Huang2024-01-03 05:11Alphafold2 v/s Parafold timings
- Issue comment#38von-elfen2023-11-02 11:44Multimer prediction error: "ValueError: Unable to retrieve parameter 'scale' for module......."
- Issue comment#38gilspeyer2023-10-24 18:40Multimer prediction error: "ValueError: Unable to retrieve parameter 'scale' for module......."
- Issue comment#42shiratorisasu2023-09-21 04:37hhalignment.cpp:3539: MergeMasterSlave
- Issue#42Licko09092023-09-18 01:45hhalignment.cpp:3539: MergeMasterSlave
- Issue#41rocketman80802023-09-03 15:43known good nvidia driver?
- Issue#40johnire802023-09-01 15:38The GPU step is requiring large amounts of CPU VMEM
- Issue comment#39erdaqorri2023-08-30 07:35Run on GPU Error
- Issue comment#34hermannschwaerzlerUIBK2023-08-24 11:47Has CPU acceleration (the parallelization of the 3 library lookup) been implemented in this repo yet?
- Issue comment#39hermannschwaerzlerUIBK2023-08-24 11:27Run on GPU Error
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 46 stars here means stars gained during the window, not the repo's star count.